Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 5.5e-199 697.6 389 100.0
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 1.3e-128 463.8 322 88.5
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 4.3e-127 458.8 326 86.2
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 1.5e-76 290.8 305 66.9
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 3.4e-47 193.4 325 49.8
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.6e-44 184.5 351 44.2
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 1.0e-43 181.8 329 48.9
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.8e-40 171.0 353 40.5
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 5.2e-40 169.5 347 40.3
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.2e-39 168.3 345 42.3
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 5.7e-39 166.0 355 45.9
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 9.8e-39 165.2 303 45.5
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.3e-38 164.9 345 42.0
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.2e-38 164.1 337 45.4
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 8.3e-38 162.2 346 42.5
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.1e-37 161.8 359 42.3
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 1.4e-37 161.4 309 51.1
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 3.1e-37 160.2 348 41.1
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 3.1e-37 160.2 344 41.6
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 4.1e-37 159.8 345 43.8
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 7.0e-37 159.1 323 47.4
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 9.1e-37 158.7 333 45.0
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 1.2e-36 158.3 319 49.5
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 1.2e-36 158.3 335 44.2
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 1.6e-36 157.9 321 50.2
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.6e-36 157.9 346 41.6
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 2.0e-36 157.5 333 45.9
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 2.0e-36 157.5 346 42.2
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 5.9e-36 156.0 346 40.2
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 7.7e-36 155.6 353 38.8
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 7.7e-36 155.6 322 45.7
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 1.3e-35 154.8 337 41.5
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 1.7e-35 154.5 327 41.9
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 5.0e-35 152.9 311 41.8
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 6.6e-35 152.5 315 47.9
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.1e-34 151.8 313 42.5
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 1.1e-34 151.8 352 39.5
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 1.5e-34 151.4 318 45.0
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 1.9e-34 151.0 343 40.8
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 2.5e-34 150.6 352 39.5
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 3.3e-34 150.2 360 40.3
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 4.3e-34 149.8 356 42.1
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 4.3e-34 149.8 341 44.9
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 5.6e-34 149.4 372 39.0
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 7.2e-34 149.1 338 39.1
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 7.2e-34 149.1 309 44.0
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 9.5e-34 148.7 346 43.1
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 1.2e-33 148.3 315 45.7
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 1.2e-33 148.3 315 41.0
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 1.6e-33 147.9 350 42.9
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 2.8e-33 147.1 341 42.8
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 6.1e-33 146.0 296 46.6
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 6.1e-33 146.0 325 45.5
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 8.0e-33 145.6 338 41.7
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.0e-32 145.2 306 43.8
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 2.3e-32 144.1 297 48.5
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 2.3e-32 144.1 349 38.7
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 3.0e-32 143.7 341 44.0
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 4.0e-32 143.3 362 41.2
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 5.2e-32 142.9 333 41.1
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 5.2e-32 142.9 372 39.5
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 5.2e-32 142.9 336 38.4
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 8.9e-32 142.1 297 47.8
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 1.2e-31 141.7 319 44.2
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 3.4e-31 140.2 342 43.0
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 5.7e-31 139.4 322 40.7
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 7.5e-31 139.0 353 41.6
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 3.7e-30 136.7 361 40.4
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 1.1e-29 135.2 298 43.0
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 1.8e-29 134.4 288 47.6
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 1.8e-29 134.4 335 44.5
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 1.2e-28 131.7 293 45.1
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 1.2e-28 131.7 293 45.1
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 2.0e-28 131.0 327 44.0
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 3.5e-28 130.2 377 40.1
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 3.5e-28 130.2 345 39.7
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 5.9e-28 129.4 303 44.6
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 1.0e-27 128.6 298 44.3
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 1.0e-27 128.6 298 44.3
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 1.0e-27 128.6 298 44.3
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 1.3e-27 128.3 350 39.7
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 3.0e-27 127.1 297 49.2
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 3.9e-27 126.7 298 42.6
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 1.1e-26 125.2 309 40.5
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 2.5e-26 124.0 337 43.6
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 9.5e-26 122.1 324 45.1
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 3.6e-25 120.2 335 42.1
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 1.0e-24 118.6 325 42.2
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 1.0e-24 118.6 331 41.7
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 2.3e-24 117.5 279 44.8
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 4.0e-24 116.7 337 43.6
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 5.2e-24 116.3 308 42.2
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 8.9e-24 115.5 330 44.2
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 1.5e-23 114.8 402 33.6
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 3.4e-23 113.6 326 43.3
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 5.8e-23 112.8 336 43.5
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.9e-22 110.5 262 41.2
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 8.3e-22 109.0 306 45.8
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.9e-21 107.8 326 41.7
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 9.2e-21 105.5 330 41.5
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 3.5e-20 103.6 297 34.0
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 3.0e-19 100.5 319 32.6
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 5.6e-18 96.3 196 41.8
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 7.3e-18 95.9 168 38.7
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.8e-16 91.3 148 47.3
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 3.1e-16 90.5 326 39.3
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 5.2e-16 89.7 397 30.5
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 3.4e-15 87.0 316 37.7
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 4.4e-15 86.7 90 54.4
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 7.5e-15 85.9 148 44.6
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 1.7e-14 84.7 330 36.1
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 6.4e-14 82.8 329 36.8
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 9.2e-13 79.0 99 55.6
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 3.5e-12 77.0 204 37.3
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 4.6e-12 76.6 154 53.2
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 1.3e-11 75.1 87 57.5
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 9.5e-10 68.9 315 28.9
ClCG05G005260 Citrullus lanatus HOM05D006303 ORTHO05D150949 1.2e-09 68.6 59 54.2
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 2.1e-09 67.8 207 34.3
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 8.1e-09 65.9 330 29.7
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.8e-08 64.7 323 28.8
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 1.8e-08 64.7 313 29.7
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.1e-08 63.9 321 28.3
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 3.1e-08 63.9 293 28.3
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 4.0e-08 63.5 171 38.6
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 4.0e-08 63.5 328 29.3
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 4.0e-08 63.5 298 27.9
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.2e-08 63.2 317 28.4
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 5.2e-08 63.2 328 27.7
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 8.9e-08 62.4 317 28.4
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 1.5e-07 61.6 337 36.5
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 2.0e-07 61.2 347 27.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 2.6e-07 60.8 272 31.2
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 2.6e-07 60.8 225 32.4
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 3.4e-07 60.5 326 26.4
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 4.4e-07 60.1 313 27.5
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 4.4e-07 60.1 281 28.5
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 7.6e-07 59.3 275 28.0
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 9.9e-07 58.9 335 27.8
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 9.9e-07 58.9 305 28.5
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 9.9e-07 58.9 305 27.9
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.7e-06 58.2 328 28.4
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 2.2e-06 57.8 307 28.0
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 2.2e-06 57.8 321 29.6
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 3.7e-06 57.0 330 27.0
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 3.7e-06 57.0 289 28.4
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 4.9e-06 56.6 274 28.8
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.9e-06 56.6 262 29.0
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 4.9e-06 56.6 319 27.9
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 6.4e-06 56.2 330 27.0
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 6.4e-06 56.2 281 27.0
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 6.4e-06 56.2 332 28.0
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 6.4e-06 56.2 278 31.7
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 8.4e-06 55.8 333 27.0
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 8.4e-06 55.8 319 26.6
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.4e-06 55.8 318 27.7
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 8.4e-06 55.8 330 26.7
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 8.4e-06 55.8 272 31.6


User provided reference genes

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