Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.0e-50 201.1 98 100.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 2.0e-36 155.6 98 80.6
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 5.9e-33 144.1 110 70.9
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.9e-15 85.9 87 48.3
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 7.2e-15 84.0 99 49.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.6e-14 82.8 99 48.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.1e-14 82.4 98 52.0
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.7e-14 82.0 98 45.9
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 3.6e-14 81.6 92 51.1
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.0e-13 80.1 104 47.1
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.0e-13 80.1 111 45.0
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.4e-13 79.7 99 43.4
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.8e-13 79.3 83 48.2
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.8e-13 79.3 104 46.2
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.0e-13 78.2 99 46.5
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 6.8e-13 77.4 102 45.1
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 8.8e-13 77.0 98 51.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.2e-12 76.6 110 46.4
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.0e-12 75.9 120 41.7
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.6e-12 75.5 103 46.6
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 3.4e-12 75.1 86 47.7
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.4e-12 75.1 97 47.4
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.4e-12 75.1 99 41.4
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.4e-12 74.7 117 44.4
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 5.7e-12 74.3 117 46.2
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 5.7e-12 74.3 90 47.8
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 5.7e-12 74.3 106 45.3
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 5.7e-12 74.3 96 51.0
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.7e-12 74.3 99 40.4
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 7.5e-12 73.9 93 46.2
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 7.5e-12 73.9 113 44.2
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 7.5e-12 73.9 104 45.2
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.8e-12 73.6 95 46.3
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.8e-12 73.6 95 46.3
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 9.8e-12 73.6 92 46.7
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 9.8e-12 73.6 92 46.7
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.3e-11 73.2 84 47.6
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.7e-11 72.8 83 47.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.7e-11 72.8 82 48.8
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.8e-11 72.0 103 43.7
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.7e-11 71.6 85 50.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 3.7e-11 71.6 85 51.8
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 3.7e-11 71.6 95 49.5
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.7e-11 71.6 92 45.7
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 3.7e-11 71.6 95 45.3
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 4.8e-11 71.2 99 41.4
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 4.8e-11 71.2 104 44.2
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 4.8e-11 71.2 109 42.2
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 6.3e-11 70.9 86 46.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 6.3e-11 70.9 85 48.2
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 6.3e-11 70.9 93 44.1
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 6.3e-11 70.9 94 41.5
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 8.3e-11 70.5 83 48.2
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.1e-10 70.1 100 44.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.1e-10 70.1 92 45.7
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.1e-10 70.1 102 44.1
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.1e-10 70.1 88 44.3
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.4e-10 69.7 91 44.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.4e-10 69.7 94 46.8
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.4e-10 69.7 89 43.8
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.8e-10 69.3 93 47.3
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.8e-10 69.3 93 46.2
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.8e-10 69.3 87 44.8
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.8e-10 69.3 106 42.5
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.4e-10 68.9 112 41.1
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.4e-10 68.9 95 47.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.4e-10 68.9 96 43.8
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.4e-10 68.9 92 44.6
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.1e-10 68.6 95 44.2
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.1e-10 68.6 101 42.6
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 4.1e-10 68.2 88 43.2
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.1e-10 68.2 97 46.4
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 4.1e-10 68.2 98 45.9
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 4.1e-10 68.2 82 45.1
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.1e-10 68.2 95 43.2
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.1e-10 68.2 87 43.7
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 5.4e-10 67.8 97 43.3
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.4e-10 67.8 94 43.6
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.4e-10 67.8 98 42.9
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.4e-10 67.8 94 43.6
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 5.4e-10 67.8 107 43.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 5.4e-10 67.8 107 43.0
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.4e-10 67.8 93 46.2
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 7.0e-10 67.4 104 45.2
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.0e-10 67.4 98 42.9
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 7.0e-10 67.4 90 42.2
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 7.0e-10 67.4 89 42.7
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 9.1e-10 67.0 83 48.2
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.1e-10 67.0 94 44.7
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.1e-10 67.0 94 43.6
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 9.1e-10 67.0 106 43.4
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.2e-09 66.6 110 46.4
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.2e-09 66.6 87 44.8
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.6e-09 66.2 108 41.7
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.6e-09 66.2 104 45.2
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-09 65.9 98 49.0
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.7e-09 65.5 110 45.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.7e-09 65.5 96 40.6
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.5e-09 65.1 95 37.9
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.5e-09 65.1 90 45.6
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.5e-09 65.1 109 41.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 3.5e-09 65.1 84 47.6
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 4.5e-09 64.7 84 45.2
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.5e-09 64.7 90 44.4
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 5.9e-09 64.3 79 45.6
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 5.9e-09 64.3 118 38.1
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 5.9e-09 64.3 118 38.1
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.9e-09 64.3 92 43.5
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 7.7e-09 63.9 100 38.0
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 7.7e-09 63.9 82 43.9
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.0e-08 63.5 97 43.3
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.0e-08 63.5 85 44.7
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.0e-08 63.5 95 43.2
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.0e-08 63.5 73 49.3
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-08 62.8 98 40.8
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.2e-08 62.4 97 42.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.2e-08 62.4 101 43.6
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 2.2e-08 62.4 92 45.7
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.9e-08 62.0 101 43.6
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.9e-08 62.0 111 35.1
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.9e-08 62.0 94 41.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 3.8e-08 61.6 79 44.3
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.8e-08 61.6 90 44.4
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 5.0e-08 61.2 87 44.8
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 5.0e-08 61.2 87 44.8
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 5.0e-08 61.2 87 44.8
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 5.0e-08 61.2 87 42.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.5e-08 60.5 85 43.5
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 8.5e-08 60.5 89 44.9
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 8.5e-08 60.5 89 44.9
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 8.5e-08 60.5 101 41.6
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.5e-08 60.5 104 40.4
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-07 60.1 87 44.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.1e-07 60.1 90 50.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.1e-07 60.1 84 41.7
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.5e-07 59.7 98 34.7
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.5e-07 59.7 98 34.7
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.9e-07 59.3 87 44.8
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.5e-07 58.9 83 43.4
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.5e-07 58.9 89 43.8
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.5e-07 58.9 88 44.3
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.2e-07 58.2 87 43.7
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 4.2e-07 58.2 97 40.2
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 4.2e-07 58.2 97 40.2
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.5e-07 57.8 102 39.2
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 5.5e-07 57.8 87 42.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 5.5e-07 57.8 79 41.8
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 7.2e-07 57.4 97 41.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 9.4e-07 57.0 97 40.2
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 9.4e-07 57.0 97 40.2
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.2e-06 56.6 119 37.0
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.2e-06 56.6 90 43.3
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.2e-06 56.6 84 47.6
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 1.2e-06 56.6 90 38.9
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.7e-06 55.5 84 39.3
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.7e-06 55.5 89 43.8
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.7e-06 54.7 91 46.2
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 4.7e-06 54.7 70 42.9
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.1e-06 54.3 93 39.8
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.1e-06 54.3 102 41.2
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 8.0e-06 53.9 91 48.4


User provided reference genes

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