Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 4.3e-75 284.6 150 100.0
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 1.5e-67 259.6 151 90.7
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 1.2e-66 256.5 151 90.1
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 1.2e-61 240.0 151 86.1
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 2.3e-60 235.7 150 83.3
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 4.9e-47 191.4 130 75.4
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 1.1e-46 190.3 146 72.6
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 3.2e-46 188.7 124 75.8
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 7.1e-46 187.6 130 77.7
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 2.1e-45 186.0 125 81.6
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.5e-45 185.3 139 74.1
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 4.6e-45 184.9 154 68.8
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 1.0e-44 183.7 131 77.1
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.3e-44 183.3 150 67.3
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 1.3e-44 183.3 118 82.2
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 1.7e-44 183.0 126 77.0
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.3e-44 182.6 139 73.4
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 3.0e-44 182.2 123 74.0
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.9e-44 181.8 139 71.9
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 5.1e-44 181.4 156 67.9
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 5.1e-44 181.4 154 67.5
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 6.6e-44 181.0 154 67.5
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 1.1e-43 180.3 154 66.9
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 1.1e-43 180.3 137 71.5
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 1.5e-43 179.9 150 68.7
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 1.9e-43 179.5 123 75.6
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.9e-43 179.5 123 74.0
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 2.5e-43 179.1 132 74.2
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 2.5e-43 179.1 141 70.2
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 5.6e-43 177.9 147 66.0
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 7.3e-43 177.6 125 76.8
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 7.3e-43 177.6 116 80.2
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 7.3e-43 177.6 140 70.0
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 7.3e-43 177.6 132 73.5
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 9.6e-43 177.2 125 76.8
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 9.6e-43 177.2 149 66.4
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 9.6e-43 177.2 128 75.8
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 9.6e-43 177.2 123 75.6
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 1.3e-42 176.8 122 74.6
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 1.3e-42 176.8 120 78.3
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.6e-42 176.4 119 79.8
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 1.6e-42 176.4 119 79.8
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 1.6e-42 176.4 151 66.9
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 2.8e-42 175.6 130 72.3
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 3.6e-42 175.3 116 81.0
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 4.8e-42 174.9 120 77.5
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 4.8e-42 174.9 160 66.9
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 6.2e-42 174.5 130 72.3
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 6.2e-42 174.5 123 74.0
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 6.2e-42 174.5 123 74.0
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 8.1e-42 174.1 137 67.9
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 1.1e-41 173.7 153 66.0
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.1e-41 173.7 116 80.2
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 1.4e-41 173.3 139 71.2
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 1.4e-41 173.3 138 69.6
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 1.4e-41 173.3 120 79.2
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 1.4e-41 173.3 122 74.6
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 1.8e-41 172.9 123 78.9
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 1.8e-41 172.9 154 65.6
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 1.8e-41 172.9 141 68.1
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 2.4e-41 172.6 155 65.2
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 2.4e-41 172.6 123 77.2
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 2.4e-41 172.6 123 73.2
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 5.3e-41 171.4 119 77.3
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 6.9e-41 171.0 119 78.2
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 6.9e-41 171.0 123 74.8
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 9.0e-41 170.6 123 74.8
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 9.0e-41 170.6 123 74.8
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 9.0e-41 170.6 123 71.5
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 1.2e-40 170.2 142 67.6
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.5e-40 169.9 154 64.9
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.5e-40 169.9 154 64.9
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.0e-40 169.5 135 71.1
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 2.0e-40 169.5 133 72.2
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 2.0e-40 169.5 155 63.9
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 2.0e-40 169.5 125 71.2
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.0e-40 169.5 151 65.6
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 2.6e-40 169.1 120 75.8
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 2.6e-40 169.1 142 68.3
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 3.4e-40 168.7 123 73.2
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 3.4e-40 168.7 118 73.7
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 4.5e-40 168.3 123 73.2
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 4.5e-40 168.3 154 65.6
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 5.8e-40 167.9 142 67.6
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 5.8e-40 167.9 123 71.5
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 9.9e-40 167.2 130 68.5
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 9.9e-40 167.2 150 63.3
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 2.2e-39 166.0 155 64.5
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 2.9e-39 165.6 139 66.9
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 3.8e-39 165.2 131 71.8
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 3.8e-39 165.2 131 71.8
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 3.8e-39 165.2 130 67.7
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 4.9e-39 164.9 137 67.2
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 6.4e-39 164.5 129 68.2
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 8.4e-39 164.1 142 65.5
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 2.4e-38 162.5 143 65.0
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 4.2e-38 161.8 150 60.7
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 9.3e-38 160.6 148 59.5
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 1.2e-37 160.2 159 58.5
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 3.5e-37 158.7 123 69.1
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 4.6e-37 158.3 123 69.1
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 1.0e-36 157.1 113 72.6
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 1.8e-36 156.4 132 69.7
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 2.3e-36 156.0 151 61.6
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 3.3e-35 152.1 152 59.9
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 4.3e-35 151.8 151 57.6
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 5.6e-35 151.4 104 76.9
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 5.6e-35 151.4 118 67.8
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 1.6e-34 149.8 125 68.8
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 2.1e-34 149.4 138 60.9
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 1.4e-33 146.7 78 92.3
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 2.6e-32 142.5 154 56.5
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 2.1e-29 132.9 135 56.3
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 4.6e-29 131.7 86 76.7
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.0e-28 130.6 75 81.3
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 1.1e-27 127.1 111 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 3.1e-25 119.0 120 53.3
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 4.0e-25 118.6 86 72.1
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 2.0e-24 116.3 128 53.1
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 1.7e-23 113.2 122 54.9
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.7e-23 113.2 103 60.2
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.4e-22 110.2 100 64.0
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 6.7e-20 101.3 75 64.0
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 1.9e-19 99.8 78 65.4
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 2.0e-16 89.7 77 58.4
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 1.7e-15 86.7 139 41.0
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 2.0e-08 63.2 36 88.9


User provided reference genes

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