Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 1.2e-46 189.5 96 100.0
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 2.7e-38 161.8 96 86.5
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 5.0e-37 157.5 96 85.4
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 4.3e-36 154.5 121 71.1
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 6.6e-29 130.6 74 90.5
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 6.8e-26 120.6 97 62.9
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.5e-25 119.4 100 65.0
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 5.8e-25 117.5 97 62.9
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 6.4e-24 114.0 94 62.8
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 1.1e-23 113.2 97 61.9
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.1e-23 113.2 97 60.8
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 7.1e-23 110.5 98 60.2
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.2e-22 109.8 99 61.6
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 1.2e-22 109.8 93 62.4
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 1.6e-22 109.4 96 55.2
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.7e-21 105.9 94 59.6
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 2.3e-21 105.5 75 69.3
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 3.0e-21 105.1 94 59.6
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 3.9e-21 104.8 94 58.5
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 6.6e-21 104.0 88 61.4
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 6.6e-21 104.0 99 58.6
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 8.6e-21 103.6 93 59.1
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 1.5e-20 102.8 98 61.2
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 4.3e-20 101.3 99 55.6
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 4.3e-20 101.3 74 67.6
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 9.5e-20 100.1 93 54.8
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 1.2e-19 99.8 92 54.3
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.8e-19 98.6 96 58.3
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 2.8e-19 98.6 61 73.8
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 4.7e-19 97.8 96 56.2
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.3e-18 95.5 88 59.1
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 5.2e-18 94.4 92 50.0
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 6.8e-18 94.0 103 51.5
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 8.9e-18 93.6 96 52.1
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.2e-17 93.2 96 52.1
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.5e-17 92.8 96 58.3
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 2.0e-17 92.4 94 47.9
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 2.6e-17 92.0 93 50.5
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 3.4e-17 91.7 95 55.8
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 3.4e-17 91.7 94 47.9
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 3.4e-17 91.7 97 52.6
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 4.4e-17 91.3 88 51.1
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 4.4e-17 91.3 94 52.1
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 4.4e-17 91.3 82 54.9
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 5.8e-17 90.9 96 52.1
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.3e-16 89.7 94 47.9
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.7e-16 89.4 94 53.2
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 2.2e-16 89.0 101 53.5
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 2.9e-16 88.6 95 47.4
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 2.9e-16 88.6 90 51.1
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 3.7e-16 88.2 94 45.7
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 3.7e-16 88.2 96 50.0
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 4.9e-16 87.8 79 57.0
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.4e-16 87.4 98 50.0
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 6.4e-16 87.4 84 57.1
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 6.4e-16 87.4 65 63.1
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 1.1e-15 86.7 91 50.5
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 1.1e-15 86.7 95 51.6
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 1.9e-15 85.9 97 46.4
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.2e-15 85.1 104 52.9
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 7.1e-15 84.0 86 54.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 7.1e-15 84.0 98 48.0
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 7.1e-15 84.0 98 48.0
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 7.1e-15 84.0 104 51.9
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 9.2e-15 83.6 100 49.0
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 9.2e-15 83.6 98 48.0
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.2e-14 83.2 87 54.0
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.2e-14 83.2 103 46.6
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 1.6e-14 82.8 95 50.5
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 2.7e-14 82.0 104 51.9
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 3.5e-14 81.6 93 45.2
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 3.5e-14 81.6 73 58.9
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 4.6e-14 81.3 78 56.4
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 4.6e-14 81.3 95 50.5
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 7.8e-14 80.5 72 61.1
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 7.8e-14 80.5 94 51.1
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.0e-13 80.1 97 45.4
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 1.0e-13 80.1 90 47.8
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.0e-13 80.1 82 56.1
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 1.3e-13 79.7 95 50.5
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 1.7e-13 79.3 81 53.1
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 2.3e-13 79.0 62 62.9
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 2.3e-13 79.0 62 62.9
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 3.0e-13 78.6 76 57.9
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 5.1e-13 77.8 77 53.2
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 5.1e-13 77.8 97 51.5
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 6.6e-13 77.4 97 45.4
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 6.6e-13 77.4 94 51.1
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 8.6e-13 77.0 97 47.4
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 1.5e-12 76.3 56 64.3
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.5e-12 76.3 61 55.7
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 2.5e-12 75.5 91 49.5
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 4.3e-12 74.7 100 41.0
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 4.3e-12 74.7 100 41.0
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.3e-12 73.9 54 61.1
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 7.3e-12 73.9 93 50.5
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 9.6e-12 73.6 93 47.3
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.2e-11 73.2 102 51.0
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 1.6e-11 72.8 99 39.4
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 2.1e-11 72.4 103 40.8
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 2.8e-11 72.0 91 42.9
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 3.6e-11 71.6 83 53.0
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 3.6e-11 71.6 77 53.2
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 6.2e-11 70.9 80 53.8
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 1.1e-10 70.1 54 57.4
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 6.8e-10 67.4 54 53.7
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 6.8e-10 67.4 54 53.7
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 6.8e-10 67.4 54 53.7
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 6.8e-10 67.4 41 70.7
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 8.9e-10 67.0 54 53.7
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 8.9e-10 67.0 54 53.7
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 8.9e-10 67.0 54 53.7
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 8.9e-10 67.0 54 53.7
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 2.6e-09 65.5 54 53.7
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 2.6e-09 65.5 54 53.7
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 3.4e-09 65.1 112 39.3
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 5.8e-09 64.3 47 66.0
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 5.8e-09 64.3 73 50.7
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 9.9e-09 63.5 53 50.9
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 1.3e-08 63.2 58 53.4
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 1.3e-08 63.2 58 53.4
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 1.3e-08 63.2 58 53.4
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.2e-08 62.4 78 46.2
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 2.9e-08 62.0 79 45.6
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 3.8e-08 61.6 54 59.3
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 4.9e-08 61.2 47 55.3
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 6.4e-08 60.8 94 46.8
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 6.4e-08 60.8 94 46.8
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 1.9e-07 59.3 70 48.6
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 1.2e-06 56.6 46 58.7
HPP92_007739 Vanilla planifolia HOM05D005475 ORTHO05D006575 3.5e-06 55.1 34 73.5
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 4.6e-06 54.7 59 49.2
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 6.0e-06 54.3 66 45.5


User provided reference genes

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