Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 1.0e-170 603.2 286 100.0
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 3.8e-141 505.0 286 86.4
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 3.4e-137 491.9 284 85.9
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 1.6e-118 429.9 293 74.7
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 5.0e-109 398.3 224 83.9
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 2.8e-99 365.9 241 73.0
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 6.2e-99 364.8 241 72.6
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.1e-98 364.0 241 73.0
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 8.9e-98 360.9 225 75.1
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 3.4e-97 359.0 242 70.2
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 4.4e-97 358.6 256 66.8
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 7.6e-97 357.8 219 74.4
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 1.3e-96 357.1 268 64.6
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.3e-96 357.1 272 64.0
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 1.3e-96 357.1 229 71.6
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.7e-96 356.7 228 71.9
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 1.1e-95 354.0 218 74.3
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 1.4e-95 353.6 253 67.6
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 1.4e-95 353.6 236 70.8
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 2.4e-95 352.8 241 68.9
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 3.2e-95 352.4 223 71.3
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 5.4e-95 351.7 217 73.7
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 5.4e-95 351.7 228 71.5
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 7.1e-95 351.3 241 68.9
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 1.2e-94 350.5 233 70.0
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 1.2e-94 350.5 247 66.8
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 2.1e-94 349.7 254 66.1
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 2.1e-94 349.7 227 69.2
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 2.7e-94 349.4 227 70.9
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 2.7e-94 349.4 254 66.1
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 2.7e-94 349.4 226 71.7
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 3.5e-94 349.0 217 72.4
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 3.5e-94 349.0 217 72.4
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 3.5e-94 349.0 217 72.4
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 3.5e-94 349.0 236 68.2
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 4.6e-94 348.6 217 73.3
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 7.8e-94 347.8 227 68.7
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 1.0e-93 347.4 257 66.1
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.3e-93 347.1 217 71.9
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 1.3e-93 347.1 225 70.7
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 1.3e-93 347.1 239 68.2
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 1.7e-93 346.7 232 67.7
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 2.3e-93 346.3 231 70.6
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 2.3e-93 346.3 226 69.9
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 3.0e-93 345.9 217 72.8
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 3.0e-93 345.9 215 73.0
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 3.9e-93 345.5 233 70.4
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 5.1e-93 345.1 232 69.4
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.1e-93 345.1 236 67.8
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 6.6e-93 344.7 217 72.8
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 8.6e-93 344.4 219 71.7
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 8.6e-93 344.4 226 69.5
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 1.1e-92 344.0 233 70.0
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 1.1e-92 344.0 231 68.0
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 1.1e-92 344.0 226 71.7
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 1.1e-92 344.0 229 69.0
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 1.5e-92 343.6 218 71.6
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 2.5e-92 342.8 224 68.3
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 3.3e-92 342.4 230 68.7
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 9.6e-92 340.9 241 66.8
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 9.6e-92 340.9 217 70.5
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 9.6e-92 340.9 217 70.5
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 1.2e-91 340.5 225 69.8
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 1.2e-91 340.5 233 66.5
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 1.2e-91 340.5 229 69.0
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 1.6e-91 340.1 217 71.0
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 1.6e-91 340.1 217 70.5
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.1e-91 339.7 223 69.5
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 2.8e-91 339.3 258 64.0
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 2.8e-91 339.3 220 70.5
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 3.6e-91 339.0 220 70.0
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 6.2e-91 338.2 258 63.2
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 6.2e-91 338.2 214 71.0
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.4e-90 337.0 251 63.7
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 2.4e-90 336.3 239 65.3
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 3.1e-90 335.9 276 59.1
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 6.8e-90 334.7 230 67.4
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 6.8e-90 334.7 228 68.9
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 8.9e-90 334.3 217 71.4
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 1.2e-89 334.0 230 67.4
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.2e-89 334.0 275 60.7
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 2.0e-89 333.2 217 69.1
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 3.4e-89 332.4 217 71.0
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 4.4e-89 332.0 224 69.6
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 5.8e-89 331.6 220 71.4
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 7.6e-89 331.3 217 70.0
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 7.6e-89 331.3 266 62.4
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 9.9e-89 330.9 239 66.5
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 9.9e-89 330.9 220 68.6
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 1.7e-88 330.1 231 66.2
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 1.0e-85 320.9 211 69.2
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 2.3e-85 319.7 192 75.0
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 2.3e-85 319.7 214 69.2
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 3.9e-85 318.9 216 68.5
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 1.9e-84 316.6 232 62.9
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 5.6e-84 315.1 329 51.1
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 4.8e-83 312.0 310 53.5
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 1.7e-80 303.5 213 67.6
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 1.5e-76 290.4 206 67.0
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 2.1e-75 286.6 186 73.1
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 2.2e-72 276.6 188 70.2
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 3.5e-70 269.2 163 73.0
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.9e-68 263.5 219 58.9
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 8.1e-67 258.1 220 58.6
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 9.3e-63 244.6 233 51.5
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 6.7e-61 238.4 218 50.5
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 1.8e-53 213.8 141 72.3
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 1.2e-49 201.1 163 62.6
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 7.9e-46 188.3 128 68.8
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 2.3e-45 186.8 227 45.8
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 1.7e-43 180.6 101 78.2
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 1.6e-38 164.1 211 43.1
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 2.6e-36 156.8 96 76.0
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 1.3e-35 154.5 109 68.8
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 5.3e-34 149.1 210 39.5
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 3.5e-33 146.4 198 42.4
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 1.3e-32 144.4 103 67.0
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.0e-32 142.5 92 70.7
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.0e-32 142.5 92 70.7
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.6e-30 137.5 83 74.7
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 6.3e-27 125.6 106 58.5
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 8.2e-27 125.2 117 56.4
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 8.2e-27 125.2 117 56.4
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.0e-24 118.2 79 69.6
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 3.6e-22 109.8 80 66.2
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 9.8e-20 101.7 88 59.1
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 7.0e-18 95.5 61 70.5
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 3.8e-16 89.7 171 31.6
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 6.5e-16 89.0 182 34.1
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 1.9e-15 87.4 190 33.2
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 6.8e-13 79.0 48 72.9
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 8.8e-13 78.6 55 63.6
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 4.4e-12 76.3 80 56.2


User provided reference genes

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