Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 0.0e+00 2090.1 1108 100.0
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 0.0e+00 1657.5 1031 86.8
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 0.0e+00 1509.2 1031 80.7
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 0.0e+00 1352.0 808 88.9
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 8.3e-293 1010.7 1049 53.1
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 1.6e-291 1006.5 1057 53.3
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 4.0e-287 991.9 961 54.6
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 4.4e-286 988.4 1049 52.1
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 9.8e-286 987.3 1036 52.4
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 6.6e-282 974.5 1046 52.9
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 8.6e-282 974.2 1046 52.8
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 3.6e-280 968.8 1040 51.9
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 6.2e-280 968.0 1046 52.1
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 4.0e-279 965.3 1049 51.5
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 7.6e-278 961.1 1041 50.9
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 1.7e-277 959.9 943 53.0
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.2e-277 959.5 1046 51.7
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 8.6e-274 947.6 1041 50.7
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 3.3e-273 945.7 1034 50.5
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 1.4e-268 930.2 1039 49.9
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 4.2e-268 928.7 1044 49.5
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 3.9e-266 922.2 1044 48.8
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 1.5e-265 920.2 1044 48.7
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 2.5e-265 919.5 1035 49.4
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 4.5e-262 908.7 1033 50.0
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 2.4e-260 902.9 1054 49.4
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 2.4e-260 902.9 950 52.4
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.7e-259 899.4 1052 50.2
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 4.6e-259 898.7 1040 48.2
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 5.1e-258 895.2 940 51.0
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 2.5e-257 892.9 903 54.8
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 4.0e-255 885.6 1039 47.6
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.5e-254 883.6 1053 46.8
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 5.5e-252 875.2 1068 47.2
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 7.1e-252 874.8 1024 47.9
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.2e-251 874.0 1028 46.4
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 3.9e-250 869.0 947 49.7
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 2.0e-246 856.7 1020 47.0
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 1.1e-244 850.9 1047 45.5
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 1.8e-242 843.6 881 50.6
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 5.1e-242 842.0 948 47.9
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 4.6e-235 818.9 970 46.5
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.8e-234 817.0 1042 46.0
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 6.7e-234 815.1 958 47.1
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.3e-232 810.8 968 45.9
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 1.6e-232 810.4 1035 44.6
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 6.9e-231 805.1 894 49.9
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 2.6e-230 803.1 1105 43.1
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 1.6e-227 793.9 1036 43.2
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 5.1e-226 788.9 890 48.8
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 9.7e-225 784.6 1021 44.3
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.7e-224 783.9 888 48.3
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 3.1e-223 779.6 1049 43.3
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 2.0e-222 776.9 1043 43.2
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 5.9e-222 775.4 1050 42.7
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 5.9e-222 775.4 1036 42.5
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 5.9e-222 775.4 1036 43.1
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 7.7e-222 775.0 1024 43.2
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 3.8e-221 772.7 965 45.4
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.6e-219 767.3 962 43.7
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 9.7e-217 758.1 1045 42.1
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.2e-211 741.1 1027 42.7
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.2e-211 741.1 1021 42.6
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 5.2e-210 735.7 921 44.7
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 1.3e-208 731.1 836 48.2
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 3.7e-208 729.6 958 45.0
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 1.1e-207 728.0 1041 41.3
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 3.1e-207 726.5 1021 42.3
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 4.1e-207 726.1 945 43.4
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 4.1e-207 726.1 910 44.4
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 4.1e-207 726.1 1025 42.5
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 5.3e-207 725.7 891 45.8
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 2.0e-206 723.8 1021 42.4
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 2.5e-204 716.8 1030 42.5
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 7.2e-204 715.3 1022 40.8
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 1.2e-203 714.5 925 44.2
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 4.7e-203 712.6 1046 41.6
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 6.1e-203 712.2 1030 42.3
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 8.0e-203 711.8 1030 42.4
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.8e-199 700.7 1026 42.0
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 2.8e-195 686.8 1061 39.5
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 3.6e-195 686.4 903 44.0
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 3.0e-194 683.3 769 47.6
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 5.2e-194 682.6 1043 40.5
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 8.3e-192 675.2 1039 39.1
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 3.1e-191 673.3 1009 39.9
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 3.8e-189 666.4 739 51.3
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 9.5e-188 661.8 878 41.3
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 2.8e-187 660.2 960 41.2
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 5.7e-185 652.5 1073 39.6
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 1.1e-183 648.3 1069 40.0
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 1.2e-174 618.2 904 41.8
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 1.8e-170 604.4 655 49.8
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 3.5e-166 590.1 1045 35.2
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 1.5e-161 574.7 828 39.9
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 4.4e-153 546.6 1084 34.0
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 9.9e-145 518.8 891 38.2
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.7e-144 518.1 941 36.8
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 1.2e-142 511.9 715 41.4
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 5.3e-130 469.9 914 33.8
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 9.1e-114 416.0 1028 31.1
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 2.5e-55 221.9 277 44.8
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 7.3e-55 220.3 646 29.6
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 7.5e-52 210.3 324 40.1
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 2.5e-47 195.3 968 23.7
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 6.2e-46 190.7 223 49.8
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 8.4e-43 180.3 783 25.7
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.3e-35 156.4 147 61.9
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 9.3e-26 123.6 440 27.7
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 4.6e-17 94.7 107 46.7
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 6.2e-14 84.3 436 24.3
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 2.0e-12 79.3 892 20.5
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 2.5e-10 72.4 124 37.1


User provided reference genes

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