Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 7.8e-71 270.4 141 100.0
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 3.2e-64 248.4 142 93.0
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 3.9e-62 241.5 142 90.1
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 2.6e-58 228.8 141 83.7
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 2.0e-50 202.6 139 74.8
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 3.4e-50 201.8 139 76.3
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.7e-49 199.5 139 75.5
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 3.8e-49 198.4 142 73.2
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 4.9e-49 198.0 136 75.7
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 3.2e-48 195.3 139 71.2
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 4.2e-48 194.9 141 70.9
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 7.1e-48 194.1 139 71.9
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 4.6e-47 191.4 139 69.8
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.3e-46 189.9 139 70.5
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 1.8e-46 189.5 140 72.1
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 6.7e-46 187.6 141 71.6
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 1.1e-45 186.8 140 70.7
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 1.5e-45 186.4 139 69.8
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-45 186.4 139 69.8
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 3.3e-45 185.3 142 68.3
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 5.6e-45 184.5 144 68.1
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 7.4e-45 184.1 140 71.4
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 9.6e-45 183.7 139 69.1
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.3e-44 183.3 140 69.3
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 1.6e-44 183.0 139 67.6
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 2.1e-44 182.6 142 66.2
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.1e-44 182.6 139 69.1
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 2.1e-44 182.6 142 69.0
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.7e-44 181.8 139 67.6
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.8e-44 181.4 139 68.3
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 4.8e-44 181.4 140 70.0
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 6.2e-44 181.0 140 67.1
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 6.2e-44 181.0 140 68.6
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 8.1e-44 180.6 140 69.3
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.1e-43 180.3 139 71.2
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 1.1e-43 180.3 144 66.0
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.4e-43 179.9 140 69.3
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 1.8e-43 179.5 139 66.2
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 1.8e-43 179.5 141 69.5
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 2.4e-43 179.1 140 70.0
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 4.0e-43 178.3 141 66.7
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 4.0e-43 178.3 140 66.4
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 4.0e-43 178.3 139 67.6
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 4.0e-43 178.3 140 68.6
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 4.0e-43 178.3 140 67.9
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 6.9e-43 177.6 140 67.1
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.2e-42 176.8 143 65.0
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.5e-42 176.4 140 65.0
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.5e-42 176.4 140 65.7
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 2.0e-42 176.0 141 64.5
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 2.0e-42 176.0 143 65.0
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.0e-42 176.0 139 66.2
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 2.6e-42 175.6 141 68.1
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 3.4e-42 175.3 140 67.9
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 3.4e-42 175.3 140 67.9
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 4.5e-42 174.9 140 67.9
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 7.6e-42 174.1 141 66.0
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.0e-41 173.7 140 66.4
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 1.0e-41 173.7 143 65.7
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.3e-41 173.3 140 64.3
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.3e-41 173.3 141 67.4
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 1.3e-41 173.3 140 66.4
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.3e-41 173.3 140 67.9
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.7e-41 172.9 143 64.3
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 2.2e-41 172.6 140 66.4
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 2.2e-41 172.6 144 66.7
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 2.2e-41 172.6 140 65.7
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.9e-41 172.2 140 65.0
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 2.9e-41 172.2 140 67.9
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 2.9e-41 172.2 140 64.3
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 6.5e-41 171.0 140 65.7
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 6.5e-41 171.0 141 63.8
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 8.4e-41 170.6 137 64.2
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.1e-40 170.2 142 66.9
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.1e-40 170.2 140 63.6
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.1e-40 170.2 141 63.1
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.4e-40 169.9 140 65.0
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 1.9e-40 169.5 139 62.6
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 2.5e-40 169.1 146 65.1
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 3.2e-40 168.7 142 62.7
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 4.2e-40 168.3 139 67.6
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 5.5e-40 167.9 141 63.8
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 9.3e-40 167.2 140 63.6
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 9.3e-40 167.2 158 62.7
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 9.3e-40 167.2 139 61.2
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 2.1e-39 166.0 141 62.4
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.1e-39 166.0 142 64.8
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 2.1e-39 166.0 140 64.3
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 2.7e-39 165.6 139 62.6
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 2.7e-39 165.6 121 73.6
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.7e-39 165.6 141 64.5
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 62.1
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 62.1
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 62.1
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 62.1
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 3.5e-39 165.2 130 70.0
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 7.9e-39 164.1 144 64.6
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.0e-38 163.7 141 63.8
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.3e-38 163.3 140 62.1
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.8e-38 162.9 140 60.7
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 3.9e-38 161.8 145 62.8
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 5.1e-38 161.4 140 61.4
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 4.3e-37 158.3 132 62.1
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 5.7e-37 157.9 106 75.5
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 9.6e-37 157.1 140 62.1
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.6e-36 156.4 129 67.4
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 2.1e-36 156.0 171 53.8
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.1e-35 153.7 107 73.8
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.8e-35 152.9 145 58.6
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.4e-35 152.5 145 57.2
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 5.3e-35 151.4 144 59.0
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 6.9e-35 151.0 142 58.5
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 1.2e-34 150.2 108 69.4
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.5e-34 149.8 90 81.1
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 2.6e-34 149.1 91 82.4
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 1.0e-33 147.1 123 67.5
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 2.2e-33 146.0 213 45.5
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 3.8e-33 145.2 100 74.0
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 5.0e-33 144.8 145 57.2
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 1.1e-32 143.7 109 66.1
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 4.2e-32 141.7 128 64.1
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 9.3e-32 140.6 104 64.4
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 5.1e-30 134.8 91 72.5
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 1.9e-29 132.9 141 54.6
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 6.3e-28 127.9 197 43.7
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 1.8e-27 126.3 72 86.1
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.0e-25 120.6 126 54.0
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 3.8e-25 118.6 107 54.2
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.1e-24 117.1 108 59.3
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 1.4e-24 116.7 97 68.0
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 2.7e-23 112.5 107 50.5
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 4.6e-23 111.7 75 76.0
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 1.8e-22 109.8 88 61.4
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 2.0e-21 106.3 88 64.8
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.9e-19 97.8 76 64.5
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.8e-17 92.0 88 58.0
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.2e-15 87.0 67 64.2
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 1.8e-11 73.2 69 59.4
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.5e-10 68.9 40 80.0
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 2.1e-07 59.7 39 76.9
TPR.G28502 Trifolium pratense HOM05D002686 ORTHO05D003222 8.0e-07 57.8 93 35.5
Ca_02236_v3 Cicer arietinum L. HOM05D002686 ORTHO05D003222 1.0e-06 57.4 93 36.6
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.8e-06 56.6 133 34.6
MELO3C015544.2 Cucumis melo HOM05D002686 ORTHO05D003222 3.0e-06 55.8 136 30.1
CAN.G1661.28 Capsicum annuum HOM05D002686 ORTHO05D003222 4.0e-06 55.5 93 36.6
Lj4g0026142 Lotus japonicus HOM05D002686 ORTHO05D003222 5.2e-06 55.1 148 31.8
Lalb_Chr12g0200301 Lupinus albus HOM05D002686 ORTHO05D003222 5.2e-06 55.1 148 33.1
Sc18g0002740 Simmondsia chinensis HOM05D002686 ORTHO05D003222 5.2e-06 55.1 95 35.8
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 6.7e-06 54.7 93 31.2
BcaB08g36522 Brassica carinata HOM05D002686 ORTHO05D003222 6.7e-06 54.7 93 33.3
Gohir.A06G078700 Gossypium hirsutum HOM05D002686 ORTHO05D003222 6.7e-06 54.7 93 34.4
Lalb_Chr13g0299321 Lupinus albus HOM05D002686 ORTHO05D003222 6.7e-06 54.7 135 33.3
Aa31LG4G13060 Aethionema arabicum HOM05D002686 ORTHO05D003222 8.8e-06 54.3 141 32.6
Psat1g135800 Pisum sativum HOM05D002686 ORTHO05D003222 8.8e-06 54.3 93 34.4
VMungo1215G1076 Vigna mungo HOM05D002686 ORTHO05D003222 8.8e-06 54.3 93 35.5


User provided reference genes

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