Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G002880 Citrullus lanatus HOM05D002770 ORTHO05D003011 1.1e-50 203.0 101 100.0
ClCG05G002890 Citrullus lanatus HOM05D002770 ORTHO05D003011 3.5e-41 171.4 84 98.8
Sed0027284 Sechium edule HOM05D002770 ORTHO05D003011 2.0e-36 155.6 84 88.1
CsaV3_3G010430 Cucumis sativus L. HOM05D002770 ORTHO05D003011 1.3e-30 136.3 84 77.4
MELO3C006267.2 Cucumis melo HOM05D002770 ORTHO05D003011 3.4e-28 128.3 79 79.7
Cfa011023 Carpinus fangiana HOM05D002770 ORTHO05D003011 1.4e-26 122.9 88 62.5
TAR374G1576 Trochodendron aralioides HOM05D002770 ORTHO05D003011 2.7e-25 118.6 84 65.5
Nn1g00665 Nelumbo nucifera HOM05D002770 ORTHO05D003011 4.6e-25 117.9 95 56.8
MSTRG.4960 Avicennia marina HOM05D002770 ORTHO05D003011 1.8e-24 115.9 83 68.7
Cc02_g25630 Coffea canephora HOM05D002770 ORTHO05D003011 2.3e-24 115.5 100 57.0
MBI04_g03343_MAGBIO Magnolia biondii HOM05D002770 ORTHO05D003011 2.3e-24 115.5 83 66.3
Prupe.2G115700 Prunus persica HOM05D002770 ORTHO05D003011 2.3e-24 115.5 84 61.9
Aqoxy3G02558 Aquilegia oxysepala HOM05D002770 ORTHO05D003011 3.0e-24 115.2 88 61.4
PGR004G2859 Punica granatum HOM05D002770 ORTHO05D003011 3.0e-24 115.2 84 66.7
QL04p026158 Quercus lobata HOM05D002770 ORTHO05D003011 5.1e-24 114.4 84 65.5
Dinv44022 Davidia involucrata HOM05D002770 ORTHO05D003011 6.7e-24 114.0 84 63.1
Solyc01g088600.4 Solanum lycopersicum HOM05D002770 ORTHO05D003011 6.7e-24 114.0 84 60.7
Sopen01g035450 Solanum pennellii HOM05D002770 ORTHO05D003011 6.7e-24 114.0 84 60.7
PGSC0003DMG401001686 Solanum tuberosum HOM05D002770 ORTHO05D003011 6.7e-24 114.0 84 60.7
SalBow4G3318 Salvia bowleyana HOM05D002770 ORTHO05D003011 1.1e-23 113.2 84 64.3
Migut.N01715 Erythranthe guttata HOM05D002770 ORTHO05D003011 1.5e-23 112.8 84 61.9
Cpa.g.sc52.70 Carica papaya HOM05D002770 ORTHO05D003011 3.3e-23 111.7 84 63.1
FvH4_7g08780 Fragaria vesca HOM05D002770 ORTHO05D003011 1.3e-22 109.8 84 61.9
GSVIVG01018374001 Vitis vinifera HOM05D002770 ORTHO05D003011 3.7e-22 108.2 84 59.5
Sc02g0003270 Simmondsia chinensis HOM05D002770 ORTHO05D003011 6.3e-22 107.5 84 64.3
Eucgr.D01183 Eucalyptus grandis HOM05D002770 ORTHO05D003011 8.2e-22 107.1 84 61.9
Manes.05G058500 Manihot esculenta HOM05D002770 ORTHO05D003011 1.1e-21 106.7 92 57.6
CiPaw.14G016800 Carya illinoinensis HOM05D002770 ORTHO05D003011 1.4e-21 106.3 92 59.8
MD02G1224900 Malus domestica HOM05D002770 ORTHO05D003011 1.4e-21 106.3 84 58.3
ATR1136G174 Amborella trichopoda HOM05D002770 ORTHO05D003011 1.8e-21 105.9 85 56.5
Atru.chr5.73 Acer truncatum HOM05D002770 ORTHO05D003011 3.1e-21 105.1 83 63.9
FAN03G2444 Fragaria x ananassa HOM05D002770 ORTHO05D003011 3.1e-21 105.1 81 61.7
Atru.chr5.43 Acer truncatum HOM05D002770 ORTHO05D003011 4.1e-21 104.8 84 61.9
TWI14G0561 Tripterygium wilfordii HOM05D002770 ORTHO05D003011 4.1e-21 104.8 84 57.1
CSS0009152 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 5.3e-21 104.4 88 59.1
Haze_02902 Corylus avellana HOM05D002770 ORTHO05D003011 5.3e-21 104.4 71 69.0
FAN01G2864 Fragaria x ananassa HOM05D002770 ORTHO05D003011 5.3e-21 104.4 81 60.5
CSS0043922 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 6.9e-21 104.0 88 58.0
CANSAT25G0893 Cannabis sativa HOM05D002770 ORTHO05D003011 6.9e-21 104.0 85 57.6
Gorai.008G111400 Gossypium raimondii HOM05D002770 ORTHO05D003011 6.9e-21 104.0 84 58.3
MSTRG.20663 Avicennia marina HOM05D002770 ORTHO05D003011 9.1e-21 103.6 84 60.7
Gohir.A12G099200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 1.2e-20 103.2 84 58.3
SGA_v2.0_scaffold77G25255 Striga asiatica HOM05D002770 ORTHO05D003011 1.5e-20 102.8 86 60.5
Ciclev10019957m.g Citrus clementina HOM05D002770 ORTHO05D003011 2.0e-20 102.4 84 60.7
RcHm_v2.0_Chr1g0344071 Rosa chinensis HOM05D002770 ORTHO05D003011 2.0e-20 102.4 79 62.0
Gohir.D12G102200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 2.6e-20 102.1 84 57.1
HPP92_022441 Vanilla planifolia HOM05D002770 ORTHO05D003011 3.4e-20 101.7 94 54.3
CDE04G2107 Ceratophyllum demersum HOM05D002770 ORTHO05D003011 4.5e-20 101.3 81 55.6
Lj9A550T68 Lonicera japonica HOM05D002770 ORTHO05D003011 7.7e-20 100.5 91 53.8
PSO782G1010 Papaver somniferum HOM05D002770 ORTHO05D003011 2.2e-19 99.0 84 54.8
Thecc.01G402500 Theobroma cacao HOM05D002770 ORTHO05D003011 2.2e-19 99.0 84 57.1
Ca_23142_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 6.5e-19 97.4 85 51.8
Lalb_Chr07g0195181 Lupinus albus HOM05D002770 ORTHO05D003011 1.1e-18 96.7 86 47.7
Oeu002904.1 Olea europaea HOM05D002770 ORTHO05D003011 1.9e-18 95.9 73 64.4
FAN06G1321 Fragaria x ananassa HOM05D002770 ORTHO05D003011 4.2e-18 94.7 70 64.3
Medtr8g009290 Medicago truncatula HOM05D002770 ORTHO05D003011 1.2e-17 93.2 98 46.9
Potri.014G044200 Populus trichocarpa HOM05D002770 ORTHO05D003011 1.2e-17 93.2 92 52.2
COL.COLO4_12352 Corchorus olitorius HOM05D002770 ORTHO05D003011 1.6e-17 92.8 88 54.5
Lj3g0001773 Lotus japonicus HOM05D002770 ORTHO05D003011 3.6e-17 91.7 87 48.3
EL10Ac1g00714 Beta vulgaris HOM05D002770 ORTHO05D003011 6.1e-17 90.9 84 51.2
Glyma.07G120500 Glycine max HOM05D002770 ORTHO05D003011 6.1e-17 90.9 86 46.5
Sabra14G0032100 Salix brachista HOM05D002770 ORTHO05D003011 6.1e-17 90.9 84 53.6
Duzib138G1245 Durio zibethinus HOM05D002770 ORTHO05D003011 7.9e-17 90.5 84 51.2
Phvul.010G041600 Phaseolus vulgaris HOM05D002770 ORTHO05D003011 1.4e-16 89.7 86 47.7
Glyma.03G103500 Glycine max HOM05D002770 ORTHO05D003011 1.8e-16 89.4 86 45.3
THA.LOC104817177 Tarenaya hassleriana HOM05D002770 ORTHO05D003011 1.8e-16 89.4 93 47.3
CARHR139850 Cardamine hirsuta HOM05D002770 ORTHO05D003011 3.9e-16 88.2 80 52.5
AUR62013789 Chenopodium quinoa HOM05D002770 ORTHO05D003011 3.9e-16 88.2 88 46.6
arahy.Tifrunner.gnm1.ann1.S2VHS4 Arachis hypogaea HOM05D002770 ORTHO05D003011 6.7e-16 87.4 97 44.3
AUR62023367 Chenopodium quinoa HOM05D002770 ORTHO05D003011 8.8e-16 87.0 88 46.6
Psat0s4427g0040 Pisum sativum HOM05D002770 ORTHO05D003011 8.8e-16 87.0 85 49.4
MD07G1090600 Malus domestica HOM05D002770 ORTHO05D003011 1.5e-15 86.3 84 51.2
TPR.G17359 Trifolium pratense HOM05D002770 ORTHO05D003011 2.0e-15 85.9 86 46.5
DCAR_025025 Daucus carota HOM05D002770 ORTHO05D003011 5.7e-15 84.3 85 48.2
Aa31LG1G26180 Aethionema arabicum HOM05D002770 ORTHO05D003011 7.4e-15 84.0 80 47.5
AL4G43670 Arabidopsis lyrata HOM05D002770 ORTHO05D003011 7.4e-15 84.0 80 50.0
AT2G44640 Arabidopsis thaliana HOM05D002770 ORTHO05D003011 3.7e-14 81.6 79 49.4
CSS0011590 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 8.2e-14 80.5 70 57.1
VMungo0331G1148 Vigna mungo HOM05D002770 ORTHO05D003011 1.8e-13 79.3 88 44.3
A03p24840 Brassica napus HOM05D002770 ORTHO05D003011 3.1e-13 78.6 80 46.2
BraA03t11691Z Brassica rapa HOM05D002770 ORTHO05D003011 3.1e-13 78.6 80 46.2
BolC3t15311H Brassica oleracea HOM05D002770 ORTHO05D003011 4.1e-13 78.2 80 46.2
Carub.0004s2719 Capsella rubella HOM05D002770 ORTHO05D003011 5.3e-13 77.8 79 48.1
Sp4g26720 Schrenkiella parvula HOM05D002770 ORTHO05D003011 7.0e-13 77.4 80 46.2
BcaC01g05204 Brassica carinata HOM05D002770 ORTHO05D003011 9.1e-13 77.0 80 45.0
C03p29620 Brassica napus HOM05D002770 ORTHO05D003011 9.1e-13 77.0 79 46.8
A05p04780 Brassica napus HOM05D002770 ORTHO05D003011 1.6e-12 76.3 80 45.0
BraA05t19454Z Brassica rapa HOM05D002770 ORTHO05D003011 1.6e-12 76.3 80 45.0
BcaC02g12288 Brassica carinata HOM05D002770 ORTHO05D003011 2.0e-12 75.9 80 45.0
C04p05590 Brassica napus HOM05D002770 ORTHO05D003011 2.0e-12 75.9 80 45.0
BolC4t22189H Brassica oleracea HOM05D002770 ORTHO05D003011 2.0e-12 75.9 80 45.0
BcaB02g08839 Brassica carinata HOM05D002770 ORTHO05D003011 2.6e-12 75.5 80 45.0
BcaB01g03304 Brassica carinata HOM05D002770 ORTHO05D003011 7.7e-12 73.9 78 44.9
Nitab4.5_0004088g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 7.7e-12 73.9 49 63.3
Nitab4.5_0005064g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 7.7e-12 73.9 62 56.5
Thhalv10001437m.g Eutrema salsugineum HOM05D002770 ORTHO05D003011 1.0e-11 73.6 80 43.8
ECA236G0339 Erigeron canadensis HOM05D002770 ORTHO05D003011 1.7e-11 72.8 84 46.4
Lsat_1_v5_gn_7_11860 Lactuca sativa HOM05D002770 ORTHO05D003011 2.2e-11 72.4 72 51.4
Peaxi162Scf00745g00016 Petunia axillaris HOM05D002770 ORTHO05D003011 2.2e-11 72.4 49 67.3
HanXRQChr06g0168271 Helianthus annuus HOM05D002770 ORTHO05D003011 2.5e-10 68.9 84 41.7
unitig_26.g8859 Utricularia gibba HOM05D002770 ORTHO05D003011 2.5e-10 68.9 61 55.7
CAN.G756.17 Capsicum annuum HOM05D002770 ORTHO05D003011 4.2e-10 68.2 49 63.3
Rhsim02G0072000 Rhododendron simsii HOM05D002770 ORTHO05D003011 5.5e-10 67.8 86 41.9
Gohir.D08G065500 Gossypium hirsutum HOM05D002770 ORTHO05D003011 7.2e-10 67.4 44 70.5
Gorai.004G067800 Gossypium raimondii HOM05D002770 ORTHO05D003011 9.4e-10 67.0 44 68.2
Hund27419 Selenicereus undatus HOM05D002770 ORTHO05D003011 9.4e-10 67.0 118 31.4
TAR365G0012 Trochodendron aralioides HOM05D002770 ORTHO05D003011 6.1e-09 64.3 88 40.9
MD07G1089000 Malus domestica HOM05D002770 ORTHO05D003011 1.0e-08 63.5 48 62.5
Actinidia05788 Actinidia chinensis HOM05D002770 ORTHO05D003011 1.4e-08 63.2 97 42.3
Sc13g0008040 Simmondsia chinensis HOM05D002770 ORTHO05D003011 5.2e-08 61.2 94 34.0
Aqoxy2G02502 Aquilegia oxysepala HOM05D002770 ORTHO05D003011 6.7e-08 60.8 88 36.4
MD07G1089700 Malus domestica HOM05D002770 ORTHO05D003011 1.5e-07 59.7 59 49.2
Lsat_1_v5_gn_1_40001 Lactuca sativa HOM05D002770 ORTHO05D003011 2.0e-07 59.3 86 41.9
PSO210G1766 Papaver somniferum HOM05D002770 ORTHO05D003011 2.0e-07 59.3 81 38.3
AUR62029961 Chenopodium quinoa HOM05D002770 ORTHO05D003011 4.4e-07 58.2 83 38.6
Nn3g21931 Nelumbo nucifera HOM05D002770 ORTHO05D003011 4.4e-07 58.2 92 34.8
MD07G1088800 Malus domestica HOM05D002770 ORTHO05D003011 5.7e-07 57.8 60 48.3
PSO761G0657 Papaver somniferum HOM05D002770 ORTHO05D003011 1.3e-06 56.6 81 38.3
HanXRQChr01g0006321 Helianthus annuus HOM05D002770 ORTHO05D003011 2.2e-06 55.8 86 39.5


User provided reference genes

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