Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 6.3e-85 317.4 160 100.0
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 3.7e-77 291.6 160 91.9
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.4e-70 268.1 160 83.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 9.5e-65 250.4 164 80.5
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 3.0e-58 228.8 170 73.5
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 6.6e-58 227.6 168 70.2
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 8.6e-58 227.3 162 67.9
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 8.6e-58 227.3 168 69.6
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.1e-57 226.9 166 67.5
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.5e-57 226.5 168 68.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.9e-57 226.1 167 67.1
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.2e-56 223.4 164 68.3
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.6e-56 223.0 165 69.1
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.6e-56 223.0 165 66.7
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.1e-56 222.6 168 67.3
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 2.8e-56 222.2 164 69.5
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 8.1e-56 220.7 166 69.9
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.1e-55 220.3 166 69.9
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.4e-55 219.9 168 66.7
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.8e-55 219.5 164 67.7
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 4.0e-55 218.4 168 66.1
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.8e-55 217.6 169 67.5
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 8.9e-55 217.2 165 66.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.2e-54 216.9 165 67.9
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.5e-54 216.5 167 65.3
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.6e-54 215.7 168 63.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 4.4e-54 214.9 165 66.7
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 4.4e-54 214.9 165 66.1
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 4.4e-54 214.9 168 65.5
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 5.8e-54 214.5 168 67.3
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.8e-54 214.5 168 65.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 7.5e-54 214.2 166 66.3
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 1.3e-53 213.4 164 66.5
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 8.3e-53 210.7 165 64.2
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.3e-53 210.7 169 63.9
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.4e-52 209.1 168 61.3
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.4e-52 209.1 167 65.3
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 5.4e-52 208.0 166 64.5
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 7.1e-52 207.6 165 63.6
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 7.1e-52 207.6 168 63.1
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 7.1e-52 207.6 172 58.7
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 9.2e-52 207.2 166 63.9
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.2e-51 206.8 164 63.4
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.6e-51 206.5 172 62.8
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.1e-51 206.1 130 80.8
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.0e-51 204.5 166 61.4
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.0e-50 203.8 162 65.4
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.0e-50 203.8 165 63.6
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-50 203.4 165 61.8
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 1.3e-50 203.4 166 65.1
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.7e-50 203.0 165 63.0
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 3.9e-50 201.8 166 62.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 3.9e-50 201.8 163 63.8
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.1e-50 201.4 168 63.1
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 5.1e-50 201.4 162 64.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.6e-50 201.1 168 62.5
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 6.6e-50 201.1 168 62.5
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.9e-49 199.5 167 59.3
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.5e-49 199.1 172 62.8
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.3e-49 198.7 165 61.8
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.3e-49 198.7 172 62.8
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 4.3e-49 198.4 158 61.4
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.3e-49 198.4 172 61.6
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.3e-49 198.4 172 62.2
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 4.3e-49 198.4 166 61.4
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 5.6e-49 198.0 164 64.0
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 9.5e-49 197.2 163 62.0
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.2e-48 196.8 159 63.5
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.1e-48 196.1 166 62.0
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.8e-48 195.7 167 62.3
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.2e-48 194.5 166 60.2
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.1e-47 193.7 168 60.7
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-47 193.0 163 60.7
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.8e-47 193.0 155 64.5
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.8e-47 193.0 158 62.7
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.4e-47 192.6 166 62.7
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.4e-47 192.6 166 60.8
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 3.1e-47 192.2 163 63.2
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 3.1e-47 192.2 163 60.7
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 3.1e-47 192.2 163 60.1
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 4.0e-47 191.8 163 60.7
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 5.2e-47 191.4 166 59.6
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 5.2e-47 191.4 163 60.1
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 6.8e-47 191.0 158 62.7
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 6.8e-47 191.0 158 62.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 8.9e-47 190.7 163 63.2
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.2e-46 190.3 166 60.2
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.0e-46 189.5 158 61.4
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.6e-46 189.1 167 59.9
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 4.4e-46 188.3 168 58.3
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 5.8e-46 188.0 163 60.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 7.6e-46 187.6 152 61.2
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 7.6e-46 187.6 167 58.1
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 9.9e-46 187.2 156 60.3
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 9.9e-46 187.2 157 58.0
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.7e-45 186.4 167 58.7
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.7e-45 186.4 167 58.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.2e-45 186.0 167 58.7
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 3.8e-45 185.3 167 58.1
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.9e-45 184.9 168 60.1
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 8.4e-45 184.1 167 58.1
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.4e-44 182.6 166 58.4
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 3.2e-44 182.2 162 61.1
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.6e-43 179.9 160 55.0
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 2.1e-43 179.5 158 58.9
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 8.7e-42 174.1 162 59.3
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 7.3e-41 171.0 128 64.1
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 9.6e-41 170.6 165 52.7
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 4.0e-39 165.2 166 53.6
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.5e-38 163.3 131 64.9
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.6e-38 162.5 172 55.8
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.4e-38 162.2 154 57.8
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 3.4e-38 162.2 168 53.0
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 3.4e-38 162.2 168 53.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.9e-37 159.1 126 62.7
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 8.4e-37 157.5 168 54.2
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 8.4e-37 157.5 122 64.8
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 2.1e-35 152.9 163 52.1
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 2.1e-35 152.9 127 64.6
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.8e-35 151.0 168 52.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.3e-34 150.2 84 88.1
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.1e-34 148.3 170 51.8
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.5e-33 146.7 170 51.8
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.9e-33 146.4 119 62.2
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.9e-33 146.4 126 58.7
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 9.6e-33 144.1 112 64.3
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.1e-32 142.9 151 52.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 4.8e-32 141.7 127 58.3
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 4.0e-31 138.7 158 43.7
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.3e-29 133.7 145 46.9
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.7e-29 133.3 172 45.3
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.9e-28 129.8 169 46.2
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 4.2e-28 128.6 99 61.6
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 4.2e-28 128.6 91 65.9
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.7e-27 125.9 155 42.6
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.0e-26 122.5 158 41.1
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.8e-24 115.9 119 47.1
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.8e-23 113.2 151 47.7
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 4.0e-23 112.1 150 38.7
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.0e-22 109.8 138 39.1
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 3.8e-21 105.5 81 66.7
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 4.6e-19 98.6 69 66.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 3.9e-18 95.5 82 52.4
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 9.6e-17 90.9 140 40.7
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.8e-15 86.7 79 57.0
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.5e-14 83.6 165 37.0
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 5.8e-14 81.6 78 55.1
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.3e-13 80.5 106 42.5
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 6.5e-13 78.2 68 67.6
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.1e-12 74.7 61 63.9
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.3e-12 74.3 57 68.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.3e-12 74.3 57 68.4
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.2e-11 73.9 61 65.6
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.7e-11 72.8 88 52.3
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.5e-11 72.4 53 69.8
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 7.9e-11 71.2 62 62.9
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.0e-10 70.9 64 60.9
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.3e-10 69.7 87 40.2
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.6e-08 63.5 85 49.4
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 2.8e-08 62.8 65 43.1
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 4.1e-07 58.9 97 34.0
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.1e-07 58.9 60 56.7
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.9e-07 58.2 63 44.4
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 2.6e-06 56.2 70 38.6
AUR62010916 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.0e-05 54.3 42 69.0


User provided reference genes

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