Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.6e-109 398.7 192 100.0
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.7e-74 282.3 148 89.9
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 4.3e-72 275.0 148 88.5
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 2.9e-60 235.7 148 75.0
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 1.0e-57 227.3 148 70.3
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.0e-53 213.0 132 74.2
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 1.6e-34 150.2 146 54.1
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 2.7e-34 149.4 136 52.2
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 2.7e-34 149.4 148 52.0
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 8.0e-34 147.9 140 52.1
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 4.0e-33 145.6 151 49.0
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.5e-32 143.7 145 49.7
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 3.3e-32 142.5 144 48.6
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 4.4e-32 142.1 143 51.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 1.7e-31 140.2 124 54.8
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 2.2e-31 139.8 149 49.0
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.2e-31 139.8 135 51.1
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 2.8e-31 139.4 140 50.7
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 4.8e-31 138.7 141 51.1
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 6.3e-31 138.3 147 47.6
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 8.2e-31 137.9 147 47.6
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.2e-31 137.9 147 46.9
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.2e-31 137.9 137 48.9
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 1.8e-30 136.7 152 47.4
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.4e-30 136.3 147 47.6
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 4.1e-30 135.6 136 51.5
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.7e-29 132.9 136 50.7
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.5e-29 132.5 151 46.4
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.7e-28 130.2 143 48.3
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 2.2e-28 129.8 137 49.6
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.5e-28 128.3 161 44.7
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 6.5e-28 128.3 151 45.7
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.1e-27 127.5 129 48.8
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.1e-27 127.5 140 49.3
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.5e-27 127.1 132 50.0
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.5e-27 126.3 150 44.7
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.5e-27 126.3 150 44.7
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.5e-27 126.3 130 47.7
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 3.2e-27 125.9 140 48.6
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 9.4e-27 124.4 137 48.9
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 9.4e-27 124.4 124 51.6
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.1e-26 123.2 139 44.6
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 4.7e-26 122.1 125 45.6
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.1e-26 121.7 155 45.8
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.1e-26 121.7 155 45.8
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.0e-25 120.9 126 42.1
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.4e-25 120.6 145 45.5
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.4e-25 120.6 155 45.2
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 1.4e-25 120.6 155 45.2
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.4e-25 120.6 133 48.9
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 2.3e-25 119.8 133 48.9
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 3.0e-25 119.4 130 48.5
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.0e-25 119.0 133 50.4
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 4.0e-25 119.0 124 46.8
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 5.2e-25 118.6 148 44.6
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 2.6e-24 116.3 132 45.5
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 3.4e-24 115.9 122 46.7
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 4.4e-24 115.5 165 41.2
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 9.8e-24 114.4 143 45.5
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.3e-23 114.0 140 42.1
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.8e-23 112.1 127 44.9
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.3e-23 111.7 127 47.2
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 8.3e-23 111.3 103 53.4
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.1e-22 110.9 164 38.4
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 1.4e-22 110.5 134 41.0
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.8e-22 110.2 149 44.3
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.8e-22 110.2 127 47.2
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 1.8e-22 110.2 124 46.0
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.1e-22 109.0 121 45.5
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 5.4e-22 108.6 130 43.1
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.0e-22 108.2 131 44.3
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 9.1e-22 107.8 124 46.0
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.2e-21 107.5 131 44.3
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 1.2e-21 107.5 163 38.0
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 2.0e-21 106.7 132 42.4
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 2.7e-21 106.3 146 42.5
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 5.9e-21 105.1 147 40.8
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 7.7e-21 104.8 138 42.0
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 7.7e-21 104.8 146 39.0
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 1.0e-20 104.4 102 50.0
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 1.7e-20 103.6 137 41.6
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 2.3e-20 103.2 130 41.5
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 2.3e-20 103.2 145 37.9
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.9e-20 102.8 157 38.2
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 5.0e-20 102.1 120 46.7
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 5.0e-20 102.1 119 44.5
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 6.6e-20 101.7 129 45.0
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 6.6e-20 101.7 157 37.6
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 6.6e-20 101.7 134 41.0
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 8.6e-20 101.3 134 40.3
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 8.6e-20 101.3 132 42.4
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 1.5e-19 100.5 144 39.6
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 2.5e-19 99.8 129 41.9
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.2e-19 99.0 126 41.3
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 9.5e-19 97.8 160 38.8
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 2.1e-18 96.7 117 44.4
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 8.0e-18 94.7 124 43.5
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 8.0e-18 94.7 156 34.6
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 8.0e-18 94.7 163 37.4
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.0e-17 94.4 103 44.7
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 2.3e-17 93.2 109 45.9
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.0e-17 92.8 127 41.7
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.2e-16 90.9 138 37.0
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 2.0e-16 90.1 115 41.7
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 2.6e-16 89.7 120 38.3
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 2.6e-16 89.7 129 41.1
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 3.4e-16 89.4 114 38.6
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.4e-16 89.4 138 41.3
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.4e-16 89.0 133 39.1
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.4e-16 89.0 125 44.8
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.4e-16 89.0 125 44.8
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 5.7e-16 88.6 103 42.7
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 7.5e-16 88.2 179 33.0
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.3e-15 87.4 138 40.6
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.2e-15 86.7 101 48.5
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.7e-15 85.9 93 49.5
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 4.9e-15 85.5 111 37.8
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.1e-14 84.3 150 37.3
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.4e-14 84.0 99 43.4
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 1.8e-14 83.6 76 52.6
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.0e-14 81.6 149 35.6
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 9.2e-14 81.3 122 37.7
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 9.2e-14 81.3 125 38.4
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.2e-13 80.9 70 50.0
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.0e-12 77.8 112 42.0
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.0e-12 77.8 112 42.0
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.3e-12 77.4 130 36.9
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.3e-12 77.4 149 34.2
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.3e-12 77.4 94 41.5
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.1e-11 74.3 102 37.3
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 9.5e-11 71.2 120 34.2
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 1.6e-10 70.5 95 42.1
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 1.6e-10 70.5 89 40.4
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 6.1e-10 68.6 90 38.9
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 1.8e-09 67.0 108 35.2
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 2.3e-09 66.6 95 37.9
Aqoxy3G01422 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 3.4e-08 62.8 98 36.7
Peaxi162Scf00016g01343 Petunia axillaris HOM05D000823 ORTHO05D000088 3.4e-08 62.8 129 31.0
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 9.8e-08 61.2 65 44.6
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.7e-07 60.5 104 35.6
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 1.7e-07 60.5 99 34.3
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 3.7e-07 59.3 45 57.8
Aqoxy5G02746 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 1.1e-06 57.8 101 33.7
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 1.1e-06 57.8 125 33.6
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 1.4e-06 57.4 103 34.0
Sed0013260 Sechium edule HOM05D000395 ORTHO05D000088 3.2e-06 56.2 96 34.4
SGA_v2.0_scaffold55G19766 Striga asiatica HOM05D000823 ORTHO05D000088 3.2e-06 56.2 85 38.8
VMungo1127G1459 Vigna mungo HOM05D000823 ORTHO05D000088 3.2e-06 56.2 134 34.3
COL.COLO4_11317 Corchorus olitorius HOM05D000395 ORTHO05D000088 5.4e-06 55.5 63 41.3
Gohir.D12G067900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 5.4e-06 55.5 108 30.6
Gorai.008G071300 Gossypium raimondii HOM05D000395 ORTHO05D000088 5.4e-06 55.5 108 30.6
Nitab4.5_0000216g0220 Nicotiana tabacum HOM05D010896 ORTHO05D011162 5.4e-06 55.5 77 36.4
PSO017G5313 Papaver somniferum HOM05D000823 ORTHO05D000088 5.4e-06 55.5 92 32.6
CSS0021571 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 7.0e-06 55.1 126 33.3
COL.COLO4_11361 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.0e-06 55.1 100 31.0


User provided reference genes

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