Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.5e-53 212.6 110 100.0
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.4e-43 178.7 117 84.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 7.8e-42 173.7 116 83.6
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 3.2e-27 125.2 105 71.4
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 3.5e-18 95.1 94 61.7
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-14 83.2 77 64.9
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.0e-14 81.6 97 58.8
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.6e-13 79.0 115 50.4
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.4e-13 78.6 77 61.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.4e-13 78.2 116 49.1
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.8e-13 77.8 84 58.3
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.3e-12 76.6 115 47.8
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.3e-12 76.6 116 48.3
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.3e-12 76.6 96 58.3
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.3e-12 76.6 93 54.8
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.7e-12 76.3 83 60.2
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.2e-12 75.9 116 48.3
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-12 75.9 116 48.3
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 4.9e-12 74.7 82 54.9
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 6.4e-12 74.3 75 56.0
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-11 73.6 81 53.1
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.4e-11 73.2 71 59.2
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.9e-11 72.8 62 64.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.4e-11 72.4 105 48.6
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.2e-11 72.0 75 54.7
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.2e-11 72.0 81 51.9
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.2e-11 72.0 81 51.9
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.2e-11 71.6 67 58.2
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 4.2e-11 71.6 101 47.5
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 5.4e-11 71.2 61 65.6
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 7.1e-11 70.9 79 54.4
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 7.1e-11 70.9 113 50.4
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.1e-11 70.9 95 53.7
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 7.1e-11 70.9 77 58.4
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 7.1e-11 70.9 73 57.5
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 9.3e-11 70.5 88 47.7
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 9.3e-11 70.5 88 47.7
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 9.3e-11 70.5 72 55.6
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.6e-10 69.7 94 48.9
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.6e-10 69.7 80 51.2
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.6e-10 69.7 61 60.7
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.6e-10 69.7 91 50.5
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.1e-10 69.3 77 50.6
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.7e-10 68.9 95 46.3
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.7e-10 68.9 72 54.2
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.7e-10 68.9 94 55.3
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.5e-10 68.6 85 56.5
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.5e-10 68.6 64 64.1
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 3.5e-10 68.6 86 54.7
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 4.6e-10 68.2 86 53.5
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 4.6e-10 68.2 86 53.5
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 4.6e-10 68.2 86 53.5
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 4.6e-10 68.2 86 53.5
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 4.6e-10 68.2 86 53.5
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 4.6e-10 68.2 72 59.7
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-10 67.8 69 59.4
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-10 67.8 69 59.4
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.0e-10 67.8 79 51.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 6.0e-10 67.8 86 51.2
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 6.0e-10 67.8 77 48.1
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.0e-10 67.8 80 52.5
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 7.8e-10 67.4 94 52.1
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.8e-10 67.4 73 57.5
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 7.8e-10 67.4 82 50.0
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 7.8e-10 67.4 72 55.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.0e-09 67.0 73 57.5
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 1.0e-09 67.0 94 52.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.0e-09 67.0 73 53.4
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.3e-09 66.6 89 44.9
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-09 66.6 60 66.7
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.3e-09 66.6 46 71.7
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.7e-09 66.2 86 52.3
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.7e-09 66.2 86 52.3
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.7e-09 66.2 86 52.3
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.7e-09 66.2 86 53.5
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.7e-09 66.2 83 53.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.7e-09 66.2 64 60.9
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.7e-09 66.2 46 71.7
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-09 66.2 78 52.6
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.7e-09 66.2 86 53.5
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 77 48.1
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.3e-09 65.9 94 51.1
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.3e-09 65.9 81 50.6
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 2.3e-09 65.9 77 46.8
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 2.3e-09 65.9 108 47.2
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.0e-09 65.5 74 54.1
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 5.1e-09 64.7 82 47.6
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 5.1e-09 64.7 62 58.1
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 6.6e-09 64.3 86 53.5
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 6.6e-09 64.3 58 65.5
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 6.6e-09 64.3 65 58.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 6.6e-09 64.3 73 52.1
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.6e-09 64.3 79 57.0
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 8.7e-09 63.9 67 52.2
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 8.7e-09 63.9 80 51.2
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 8.7e-09 63.9 67 55.2
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-08 63.5 86 51.2
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.1e-08 63.5 60 60.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-08 63.5 50 72.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.1e-08 63.5 65 53.8
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.1e-08 63.5 94 52.1
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.5e-08 63.2 86 52.3
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.5e-08 63.2 85 52.9
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 1.5e-08 63.2 94 45.7
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.5e-08 63.2 42 76.2
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.5e-08 63.2 74 52.7
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 1.9e-08 62.8 81 46.9
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.9e-08 62.8 67 50.7
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 76 51.3
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.5e-08 62.4 44 70.5
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 3.3e-08 62.0 66 56.1
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 4.3e-08 61.6 59 61.0
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 4.3e-08 61.6 86 48.8
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 4.3e-08 61.6 86 48.8
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 4.3e-08 61.6 86 48.8
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.3e-08 61.6 70 51.4
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 4.3e-08 61.6 82 42.7
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 5.6e-08 61.2 74 52.7
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 5.6e-08 61.2 84 47.6
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 5.6e-08 61.2 72 48.6
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 5.6e-08 61.2 66 56.1
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 7.3e-08 60.8 60 58.3
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 7.3e-08 60.8 82 51.2
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.3e-08 60.8 74 51.4
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 7.3e-08 60.8 66 53.0
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 7.3e-08 60.8 89 49.4
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 7.3e-08 60.8 70 57.1
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 9.6e-08 60.5 98 45.9
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.3e-07 60.1 71 52.1
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-07 59.7 81 45.7
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.6e-07 59.7 70 50.0
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.1e-07 59.3 67 55.2
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-07 58.9 86 48.8
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.8e-07 58.9 70 47.1
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 2.8e-07 58.9 64 51.6
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 3.6e-07 58.5 81 45.7
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 3.6e-07 58.5 60 58.3
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 3.6e-07 58.5 74 48.6
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.6e-07 58.5 87 51.7
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 3.6e-07 58.5 85 47.1
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 4.8e-07 58.2 79 45.6
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 4.8e-07 58.2 65 52.3
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 4.8e-07 58.2 70 45.7
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 6.2e-07 57.8 74 51.4
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 6.2e-07 57.8 65 53.8
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 6.2e-07 57.8 91 45.1
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 6.2e-07 57.8 55 60.0
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 6.2e-07 57.8 43 67.4
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 6.2e-07 57.8 43 67.4
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 6.2e-07 57.8 89 51.7
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 6.2e-07 57.8 85 43.5
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 8.1e-07 57.4 65 50.8
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 8.1e-07 57.4 87 42.5
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.1e-06 57.0 73 49.3
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 1.4e-06 56.6 69 49.3
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 1.4e-06 56.6 61 52.5
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.4e-06 56.6 75 53.3
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 1.8e-06 56.2 69 53.6
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 3.1e-06 55.5 41 70.7
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 3.1e-06 55.5 59 52.5
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 4.0e-06 55.1 77 45.5
Lsat_1_v5_gn_3_5041 Lactuca sativa HOM05D003683 ORTHO05D004143 4.0e-06 55.1 92 44.6
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.3e-06 54.7 77 46.8
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 5.3e-06 54.7 78 46.2
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 5.3e-06 54.7 65 50.8
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 6.9e-06 54.3 81 43.2
Eucgr.A01509 Eucalyptus grandis HOM05D003360 ORTHO05D003759 6.9e-06 54.3 61 55.7
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.9e-06 54.3 78 46.2
Ciclev10013416m.g Citrus clementina HOM05D003360 ORTHO05D003759 9.0e-06 53.9 61 52.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 9.0e-06 53.9 63 54.0


User provided reference genes

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