Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 0.0e+00 1821.2 997 100.0
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 0.0e+00 1282.3 1029 73.5
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.3e-305 1053.1 1025 65.1
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 1.2e-258 897.1 867 64.4
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.1e-243 847.4 976 55.9
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 8.7e-241 837.8 982 54.7
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.5e-237 827.0 1027 53.5
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 3.3e-232 809.3 947 53.9
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.8e-222 776.9 1024 51.8
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 9.0e-222 774.6 960 52.2
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 2.1e-218 763.5 1007 51.4
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 2.5e-216 756.5 1010 49.7
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 5.3e-214 748.8 1033 49.1
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 4.2e-211 739.2 937 51.2
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 7.2e-211 738.4 851 54.5
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 7.9e-210 734.9 983 51.1
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.0e-209 734.6 970 49.3
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.8e-209 733.8 1005 49.3
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 2.3e-209 733.4 958 51.0
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 6.7e-209 731.9 879 52.8
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.5e-208 730.7 1029 48.7
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-207 727.6 971 50.3
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.1e-206 722.6 1008 48.9
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 2.6e-205 719.9 1031 48.5
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.9e-205 718.8 972 49.2
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 6.5e-204 715.3 978 48.7
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 1.1e-203 714.5 966 48.6
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.6e-202 710.7 940 50.6
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 3.9e-201 706.1 968 49.4
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 3.9e-201 706.1 968 49.4
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 2.6e-200 703.4 1054 46.8
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 9.7e-200 701.4 1055 46.6
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.7e-199 700.7 1053 46.7
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 5.3e-198 695.7 970 48.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 2.6e-197 693.3 1022 46.5
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.9e-196 689.9 978 47.1
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.5e-195 687.6 978 46.8
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 5.5e-195 685.6 1059 46.0
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.7e-194 683.3 978 46.8
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 8.0e-194 681.8 945 47.6
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-193 679.9 971 47.6
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 8.8e-193 678.3 978 46.6
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.1e-192 677.9 961 47.5
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 1.1e-192 677.9 1043 46.2
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.4e-192 676.0 998 47.2
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-191 674.1 947 47.9
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.7e-191 674.1 960 48.0
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 3.1e-190 669.8 977 46.2
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 7.0e-190 668.7 1030 46.6
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 4.5e-189 666.0 1085 45.1
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-188 662.5 975 47.4
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 2.5e-187 660.2 965 47.8
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 7.2e-187 658.7 1027 45.8
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 7.2e-187 658.7 1028 45.2
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 7.2e-187 658.7 978 47.6
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.2e-186 657.9 1054 45.4
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.8e-185 654.1 1074 44.9
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 8.8e-185 651.7 937 47.3
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.5e-184 651.0 980 46.6
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 2.0e-184 650.6 947 46.0
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 9.8e-184 648.3 892 48.8
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.3e-183 647.9 985 47.1
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 1.1e-182 644.8 933 47.2
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 4.1e-182 642.9 978 45.1
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 1.1e-179 634.8 878 48.5
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.5e-179 633.6 845 52.8
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 3.2e-179 633.3 986 44.7
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 2.1e-178 630.6 972 46.4
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.3e-177 627.1 921 46.6
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.5e-176 624.4 983 45.7
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.6e-176 623.6 990 44.4
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.2e-173 614.8 964 45.2
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.5e-173 613.2 978 44.9
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 5.9e-173 612.5 918 47.7
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.0e-172 611.7 1051 44.1
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.5e-171 607.8 976 44.9
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 3.3e-171 606.7 967 45.7
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 4.7e-170 602.8 961 43.6
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.7e-168 595.9 977 44.6
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 7.5e-168 595.5 1056 43.1
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.4e-166 591.3 967 43.8
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.0e-164 585.1 964 43.9
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 8.6e-164 582.0 1030 42.6
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.4e-161 574.7 964 42.0
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 9.8e-160 568.5 993 42.4
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 2.2e-159 567.4 977 41.5
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 2.2e-159 567.4 947 41.5
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.2e-159 567.4 974 41.9
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 2.0e-157 560.8 1049 42.8
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 7.8e-157 558.9 972 41.5
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.1e-155 555.1 974 43.7
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.5e-155 554.7 950 41.8
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 1.9e-155 554.3 950 41.4
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.9e-155 554.3 945 41.4
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 3.3e-155 553.5 932 43.9
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.5e-152 544.7 958 41.1
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.2e-149 535.0 935 43.0
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 3.9e-148 530.0 950 41.1
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.1e-147 528.5 978 39.1
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.9e-147 527.7 963 41.4
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 6.8e-145 519.2 999 40.2
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 2.6e-144 517.3 981 40.0
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 4.1e-142 510.0 1040 39.1
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.3e-140 505.0 773 46.3
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 3.0e-132 477.2 835 44.6
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 6.6e-132 476.1 965 38.9
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 5.6e-131 473.0 497 56.7
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.7e-125 454.1 1009 37.3
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 4.6e-125 453.4 946 38.2
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 3.0e-124 450.7 928 38.9
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 1.8e-113 414.8 628 43.6
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.2e-104 385.6 931 35.0
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 5.7e-99 366.7 974 34.4
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 5.0e-95 353.6 663 40.9
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 6.7e-92 343.2 703 40.1
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.8e-90 337.8 443 51.0
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 6.7e-84 316.6 934 32.7
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 3.2e-78 297.7 400 53.0
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 1.2e-75 289.3 441 43.5
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 4.8e-74 283.9 401 50.9
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 9.8e-67 259.6 425 39.5
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-65 256.1 506 41.1
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-63 249.2 490 39.0
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.3e-60 238.4 203 61.6
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.1e-53 215.3 420 36.9
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.6e-48 199.1 172 62.8
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 5.6e-46 190.7 208 54.3
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 1.6e-45 189.1 367 36.2
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 2.2e-42 178.7 148 60.1
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 5.4e-41 174.1 141 60.3
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 3.6e-37 161.4 735 29.8
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.7e-34 152.5 171 57.3
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-32 144.1 249 41.0
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 8.6e-31 140.2 145 61.4
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.5e-30 139.4 248 42.3
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-28 132.5 86 80.2
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 8.9e-28 130.2 579 28.2
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.7e-26 125.9 234 39.3
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 8.4e-26 123.6 511 26.0
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 8.7e-23 113.6 169 49.7
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 8.1e-21 107.1 97 57.7
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 8.1e-21 107.1 97 57.7
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.2e-20 104.4 103 54.4
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.4e-17 94.4 396 28.0
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 2.5e-14 85.5 108 48.1
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-12 78.6 80 56.2
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-12 78.6 80 56.2
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.6e-11 75.5 129 38.0
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.6e-11 75.5 129 38.0
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.6e-11 75.5 129 38.0
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.7e-10 72.8 152 34.2
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 4.9e-10 71.2 298 26.2
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.4e-10 70.5 53 66.0
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 3.2e-09 68.6 38 86.8
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.2e-09 68.2 118 37.3
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.2e-09 68.2 118 37.3
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 5.4e-09 67.8 64 62.5
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 7.1e-09 67.4 79 49.4
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-08 65.5 96 44.8
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.7e-08 65.5 39 79.5
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 6.0e-08 64.3 56 58.9
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-07 62.8 59 62.7
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 5.1e-07 61.2 55 58.2
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 4.3e-06 58.2 45 57.8
arahy.Tifrunner.gnm1.ann1.P6DNGG Arachis hypogaea HOM05D004001 ORTHO05D004559 5.6e-06 57.8 40 72.5
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 7.4e-06 57.4 75 45.3


User provided reference genes

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