Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 0.0e+00 1224.9 675 100.0
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.8e-311 1072.0 677 88.6
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 2.5e-308 1061.6 679 88.1
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 2.4e-290 1001.9 676 82.7
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 8.9e-205 717.6 668 61.7
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 2.0e-201 706.4 671 63.2
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 2.1e-198 696.4 667 62.2
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 2.9e-195 686.0 677 62.2
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 2.4e-194 682.9 672 62.1
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 1.0e-192 677.6 685 57.7
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 1.6e-190 670.2 669 60.5
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 2.3e-189 666.4 677 60.0
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 5.2e-189 665.2 686 56.4
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 8.9e-189 664.5 675 58.7
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 1.2e-188 664.1 687 61.4
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 1.5e-188 663.7 666 60.8
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 7.1e-186 654.8 681 59.9
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 7.1e-186 654.8 679 58.0
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 1.6e-185 653.7 669 57.7
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 1.7e-184 650.2 695 57.7
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 3.3e-183 646.0 676 60.2
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 5.6e-183 645.2 676 59.5
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 9.5e-183 644.4 677 58.1
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 3.6e-182 642.5 687 57.5
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 6.2e-182 641.7 680 54.6
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 2.0e-180 636.7 652 60.3
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 1.7e-179 633.6 676 57.1
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 4.9e-179 632.1 667 58.6
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 6.4e-179 631.7 670 57.5
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 7.8e-177 624.8 672 54.8
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 1.0e-176 624.4 662 58.2
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 1.3e-176 624.0 668 55.1
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 2.3e-176 623.2 665 58.5
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 1.9e-175 620.2 684 53.4
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 3.3e-175 619.4 668 57.8
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 1.6e-174 617.1 689 50.9
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 4.7e-174 615.5 677 56.0
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 1.8e-173 613.6 712 55.3
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 7.6e-172 608.2 670 53.3
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 2.4e-170 603.2 680 55.6
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 3.2e-170 602.8 682 54.4
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 9.3e-170 601.3 677 54.5
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 1.2e-169 600.9 691 55.4
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 4.6e-169 599.0 672 55.5
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 1.3e-168 597.4 704 55.7
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 1.7e-168 597.0 694 54.3
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 3.0e-168 596.3 679 56.8
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 1.1e-167 594.3 528 62.3
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 1.5e-167 594.0 670 55.2
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 3.3e-167 592.8 685 55.0
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 4.0e-165 585.9 661 56.0
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 6.9e-165 585.1 664 55.0
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 2.6e-164 583.2 685 56.6
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 4.5e-164 582.4 673 55.9
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 4.5e-164 582.4 721 53.1
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 7.6e-164 581.6 682 52.9
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 2.9e-163 579.7 526 59.5
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 1.9e-162 577.0 663 54.8
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 2.4e-162 576.6 673 52.5
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.4e-162 576.6 675 56.1
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 1.2e-161 574.3 529 62.2
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 1.2e-161 574.3 676 56.4
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 1.6e-161 573.9 684 53.8
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 2.1e-161 573.5 529 62.2
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 6.0e-161 572.0 534 60.9
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 7.9e-161 571.6 668 55.1
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 1.8e-160 570.5 574 58.0
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 2.3e-160 570.1 665 54.6
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 8.7e-160 568.2 682 51.6
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 6.2e-158 562.0 665 53.4
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 1.2e-156 557.8 667 54.7
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 8.4e-155 551.6 674 52.8
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 2.3e-152 543.5 696 48.6
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 3.3e-151 539.7 656 51.7
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 1.8e-149 533.9 661 53.3
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 4.5e-148 529.3 664 50.8
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 3.3e-143 513.1 683 50.2
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 2.4e-141 506.9 578 56.1
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 2.4e-141 506.9 674 48.4
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 1.2e-140 504.6 705 47.9
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 5.0e-139 499.2 680 51.0
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 7.2e-138 495.4 633 48.8
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 1.4e-133 481.1 530 51.7
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 3.1e-133 479.9 506 52.0
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 5.9e-132 475.7 644 45.3
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 3.2e-130 469.9 577 53.7
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 2.1e-129 467.2 507 51.3
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 1.4e-128 464.5 506 51.6
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 5.1e-128 462.6 510 49.8
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 4.4e-127 459.5 534 50.6
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 3.8e-123 446.4 687 42.5
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 1.2e-121 441.4 512 49.6
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 2.1e-121 440.7 589 51.6
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 2.1e-121 440.7 529 51.8
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 2.7e-121 440.3 504 50.4
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 2.7e-121 440.3 504 50.4
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 3.7e-118 429.9 562 50.4
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 1.3e-115 421.4 506 48.4
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 2.8e-97 360.5 385 51.7
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 7.5e-95 352.4 484 47.3
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 1.2e-92 345.1 656 41.6
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 3.5e-92 343.6 369 53.7
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 1.6e-89 334.7 608 43.4
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 3.7e-86 323.6 524 39.9
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 8.9e-72 275.8 529 38.0
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 2.9e-70 270.8 298 53.0
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.5e-58 231.9 223 53.4
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 2.6e-55 221.1 493 32.3
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 1.9e-45 188.3 231 44.2
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 2.1e-36 158.3 440 35.0
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 2.1e-33 148.3 107 72.0
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 1.9e-29 135.2 574 25.8
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 2.0e-23 115.2 167 44.3
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 2.4e-16 91.7 191 48.2
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 1.0e-11 76.3 50 70.0
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 6.3e-09 67.0 91 45.1
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.7e-06 58.9 230 30.0


User provided reference genes

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