Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G001540 Citrullus lanatus HOM05D001158 ORTHO05D000964 7.6e-129 463.8 222 100.0
CsaV3_3G008920 Cucumis sativus L. HOM05D001158 ORTHO05D000964 1.3e-80 303.5 167 84.4
Sed0011042 Sechium edule HOM05D001158 ORTHO05D000964 7.0e-66 254.6 150 81.3
QL08p048848 Quercus lobata HOM05D001158 ORTHO05D000964 5.2e-45 185.3 166 52.4
Duzib133G0578 Durio zibethinus HOM05D001158 ORTHO05D000964 6.8e-45 184.9 168 52.4
MELO3C006112.2 Cucumis melo HOM05D001158 ORTHO05D000964 1.2e-44 184.1 100 86.0
Prupe.2G170300 Prunus persica HOM05D001158 ORTHO05D000964 2.6e-44 183.0 163 53.4
Thecc.01G359300 Theobroma cacao HOM05D001158 ORTHO05D000964 3.4e-44 182.6 168 52.4
Gohir.A12G109100 Gossypium hirsutum HOM05D001158 ORTHO05D000964 8.3e-43 177.9 166 53.0
Gohir.D12G112100 Gossypium hirsutum HOM05D001158 ORTHO05D000964 1.1e-42 177.6 167 53.9
Atru.chr5.492 Acer truncatum HOM05D001158 ORTHO05D000964 7.0e-42 174.9 165 51.5
CANSAT56G0931 Cannabis sativa HOM05D001158 ORTHO05D000964 1.2e-41 174.1 147 51.0
vmacro13288 Vaccinium macrocarpon HOM05D001158 ORTHO05D000964 7.8e-41 171.4 165 47.9
TAR375G1126 Trochodendron aralioides HOM05D001158 ORTHO05D000964 2.3e-40 169.9 167 46.1
Lj3g0027208 Lotus japonicus HOM05D001158 ORTHO05D000964 5.0e-40 168.7 169 51.5
Sabra14G0061100 Salix brachista HOM05D001158 ORTHO05D000964 1.9e-39 166.8 168 46.4
FAN03G2416 Fragaria x ananassa HOM05D001158 ORTHO05D000964 3.3e-39 166.0 167 49.1
FAN06G0707 Fragaria x ananassa HOM05D001158 ORTHO05D000964 3.3e-39 166.0 167 49.7
FvH4_7g14250 Fragaria vesca HOM05D001158 ORTHO05D000964 5.6e-39 165.2 167 49.1
Rhsim07G0015300 Rhododendron simsii HOM05D001158 ORTHO05D000964 9.5e-39 164.5 164 49.4
Actinidia10012 Actinidia chinensis HOM05D001158 ORTHO05D000964 1.2e-38 164.1 170 46.5
FAN06G3042 Fragaria x ananassa HOM05D001158 ORTHO05D000964 4.7e-38 162.2 151 51.7
Lalb_Chr17g0339651 Lupinus albus HOM05D001158 ORTHO05D000964 4.7e-38 162.2 155 52.3
BcaC04g24167 Brassica carinata HOM05D001604 ORTHO05D001432 6.2e-38 161.8 169 46.2
SHI13444 Sapria himalayana HOM05D001158 ORTHO05D000964 6.2e-38 161.8 159 52.2
THA.LOC104801440 Tarenaya hassleriana HOM05D001158 ORTHO05D000964 6.2e-38 161.8 167 46.7
AL6G52990 Arabidopsis lyrata HOM05D001604 ORTHO05D001432 2.3e-37 159.8 168 45.2
BcaB01g02254 Brassica carinata HOM05D001604 ORTHO05D001432 2.3e-37 159.8 151 50.3
Gorai.008G121500 Gossypium raimondii HOM05D001158 ORTHO05D000964 2.3e-37 159.8 126 60.3
Dinv32481 Davidia involucrata HOM05D000001 ORTHO05D011176 3.1e-37 159.5 168 47.6
FAN10G0224 Fragaria x ananassa HOM05D001158 ORTHO05D000964 3.1e-37 159.5 147 52.4
BraA09t35715Z Brassica rapa HOM05D001604 ORTHO05D001432 4.0e-37 159.1 172 44.8
C09p00410 Brassica napus HOM05D001604 ORTHO05D001432 6.8e-37 158.3 152 49.3
BolC9t52976H Brassica oleracea HOM05D001158 ORTHO05D000964 1.2e-36 157.5 151 49.0
PGR031G0433 Punica granatum HOM05D001158 ORTHO05D000964 2.0e-36 156.8 165 46.1
TWI59G0723 Tripterygium wilfordii HOM05D001158 ORTHO05D000964 4.4e-36 155.6 170 44.7
Thhalv10029141m.g Eutrema salsugineum HOM05D001158 ORTHO05D000964 7.5e-36 154.8 152 46.1
AT4G00467 Arabidopsis thaliana HOM05D001158 ORTHO05D000964 9.8e-36 154.5 168 44.0
A09p00450 Brassica napus HOM05D001604 ORTHO05D001432 9.8e-36 154.5 152 48.0
Aa31LG5G510 Aethionema arabicum HOM05D001158 ORTHO05D000964 1.3e-35 154.1 166 44.0
CiPaw.02G030600 Carya illinoinensis HOM05D001158 ORTHO05D000964 1.3e-35 154.1 120 60.0
Ciclev10024048m.g Citrus clementina HOM05D001158 ORTHO05D000964 1.7e-35 153.7 157 51.0
Carub.0006s3679 Capsella rubella HOM05D001158 ORTHO05D000964 2.9e-35 152.9 152 46.1
Sp6g00510 Schrenkiella parvula HOM05D001158 ORTHO05D000964 1.1e-34 151.0 152 46.7
MD01G1060400 Malus domestica HOM05D001158 ORTHO05D000964 1.4e-34 150.6 118 59.3
Medtr8g030870 Medicago truncatula HOM05D001158 ORTHO05D000964 1.4e-34 150.6 170 47.1
Manes.05G034500 Manihot esculenta HOM05D001158 ORTHO05D000964 2.4e-34 149.8 148 48.6
RcHm_v2.0_Chr1g0355241 Rosa chinensis HOM05D001158 ORTHO05D000964 5.4e-34 148.7 142 53.5
Aqoxy7G00312 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 7.1e-34 148.3 168 42.9
CARHR000050 Cardamine hirsuta HOM05D001158 ORTHO05D000964 1.6e-33 147.1 143 48.3
MD07G1137300 Malus domestica HOM05D001158 ORTHO05D000964 6.6e-32 141.7 118 55.1
BcaB01g02162 Brassica carinata HOM05D001604 ORTHO05D001432 3.3e-31 139.4 152 45.4
arahy.Tifrunner.gnm1.ann1.GZWF51 Arachis hypogaea HOM05D001158 ORTHO05D000964 5.6e-31 138.7 164 43.9
BcaC01g06877 Brassica carinata HOM05D001604 ORTHO05D001432 2.8e-30 136.3 152 44.7
BolC3t16191H Brassica oleracea HOM05D000346 ORTHO05D000326 2.8e-30 136.3 152 44.7
A03p32170 Brassica napus HOM05D000346 ORTHO05D001432 3.6e-30 136.0 154 44.2
C03p39200 Brassica napus HOM05D000346 ORTHO05D001432 6.2e-30 135.2 152 44.1
arahy.Tifrunner.gnm1.ann1.LFR1QN Arachis hypogaea HOM05D001158 ORTHO05D000964 1.4e-29 134.0 163 43.6
Glyma.03G009400 Glycine max HOM05D001158 ORTHO05D000964 1.4e-29 134.0 151 46.4
BraA03t12387Z Brassica rapa HOM05D000346 ORTHO05D001432 2.3e-29 133.3 149 44.3
Lsat_1_v5_gn_7_4640 Lactuca sativa HOM05D001158 ORTHO05D000964 6.8e-29 131.7 166 42.2
Peaxi162Scf00008g02130 Petunia axillaris HOM05D001158 ORTHO05D000964 8.9e-29 131.3 170 43.5
EL10Ac1g00419 Beta vulgaris HOM05D001158 ORTHO05D000964 2.6e-28 129.8 150 46.0
CARHR248570 Cardamine hirsuta HOM05D001158 ORTHO05D000964 5.8e-28 128.6 131 48.1
CSS0029556 Camellia sinensis var. sinensis HOM05D001158 ORTHO05D000964 8.4e-27 124.8 118 47.5
SGA_v2.0_scaffold4G02324 Striga asiatica HOM05D001158 ORTHO05D000964 1.4e-26 124.0 167 38.3
SalBow3G2992 Salvia bowleyana HOM05D001158 ORTHO05D000964 1.9e-26 123.6 157 42.0
AUR62004355 Chenopodium quinoa HOM05D001158 ORTHO05D000964 9.2e-26 121.3 115 47.8
AUR62022540 Chenopodium quinoa HOM05D001158 ORTHO05D000964 1.2e-25 120.9 115 47.8
AUR62022560 Chenopodium quinoa HOM05D001158 ORTHO05D000964 1.2e-25 120.9 115 47.8
Nitab4.5_0007064g0020 Nicotiana tabacum HOM05D001158 ORTHO05D000964 1.6e-25 120.6 166 42.2
HanXRQChr06g0170051 Helianthus annuus HOM05D001158 ORTHO05D000964 4.6e-25 119.0 168 37.5
Solyc10g017480.1 Solanum lycopersicum HOM05D001158 ORTHO05D000964 6.0e-25 118.6 151 43.7
DCAR_025192 Daucus carota HOM05D001158 ORTHO05D000964 7.8e-25 118.2 109 48.6
Oeu060666.1 Olea europaea HOM05D001158 ORTHO05D000964 6.6e-24 115.2 126 47.6
Sc26g0000920 Simmondsia chinensis HOM05D001158 ORTHO05D000964 8.6e-24 114.8 135 43.7
Potri.014G084100 Populus trichocarpa HOM05D001158 ORTHO05D000964 1.1e-23 114.4 149 40.3
Oeu061931.1 Olea europaea HOM05D001158 ORTHO05D000964 1.2e-22 110.9 107 49.5
TPR.G39880 Trifolium pratense HOM05D001158 ORTHO05D000964 6.2e-22 108.6 138 41.3
unitig_0.g1265 Utricularia gibba HOM05D001158 ORTHO05D000964 1.9e-18 97.1 117 41.9
Migut.B01751 Erythranthe guttata HOM05D001158 ORTHO05D000964 7.8e-17 91.7 147 34.0
HPP92_005037 Vanilla planifolia HOM05D001158 ORTHO05D000964 1.0e-16 91.3 116 41.4
Nitab4.5_0000386g0070 Nicotiana tabacum HOM05D001158 ORTHO05D000964 2.5e-15 86.7 122 41.8
CsaV3_3G008940 Cucumis sativus L. HOM05D000001 ORTHO05D011176 1.6e-14 84.0 49 77.6
Actinidia20905 Actinidia chinensis HOM05D000346 ORTHO05D000326 6.2e-14 82.0 82 43.9
Ah.01g005370 Amaranthus hybridus HOM05D001452 ORTHO05D001388 2.4e-13 80.1 133 36.8
Phvul.010G098601 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 9.0e-13 78.2 113 42.5
Haze_15500 Corylus avellana HOM05D000001 ORTHO05D011176 2.6e-12 76.6 47 70.2
Cfa003929 Carpinus fangiana HOM05D000001 ORTHO05D011176 5.8e-12 75.5 47 68.1
vmacro13287 Vaccinium macrocarpon HOM05D000001 ORTHO05D011176 7.6e-12 75.1 56 58.9
Rhsim07G0015400 Rhododendron simsii HOM05D000001 ORTHO05D011176 2.2e-11 73.6 55 60.0
Aqoxy4G02886 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 6.4e-11 72.0 111 37.8
Dinv35594 Davidia involucrata HOM05D001158 ORTHO05D000964 6.4e-11 72.0 108 38.0
Cc06_g02580 Coffea canephora HOM05D001158 ORTHO05D000964 8.4e-11 71.6 118 38.1
Glyma.02G248000 Glycine max HOM05D001158 ORTHO05D000964 8.4e-11 71.6 116 32.8
Nn2g11123 Nelumbo nucifera HOM05D001158 ORTHO05D000964 1.9e-10 70.5 112 33.0
CSS0034607 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D011176 3.2e-10 69.7 47 63.8
QL08p048851 Quercus lobata HOM05D000001 ORTHO05D011176 4.2e-10 69.3 47 68.1
SEGI_00426 Sequoiadendron giganteum HOM05D001158 ORTHO05D000964 4.2e-10 69.3 128 39.1
Lj3g0001533 Lotus japonicus HOM05D001158 ORTHO05D000964 5.4e-10 68.9 61 50.8
VMungo0647G0930 Vigna mungo HOM05D001158 ORTHO05D000964 7.1e-10 68.6 113 34.5
Cfa012766 Carpinus fangiana HOM05D001035 ORTHO05D001045 1.2e-09 67.8 43 72.1
Duzib138G0797 Durio zibethinus HOM05D001158 ORTHO05D000964 2.7e-09 66.6 43 72.1
Glyma.18G038400 Glycine max HOM05D001158 ORTHO05D000964 3.5e-09 66.2 112 32.1
Oeu033971.2 Olea europaea HOM05D000001 ORTHO05D011176 3.5e-09 66.2 47 61.7
Cc02_g07750 Coffea canephora HOM05D001158 ORTHO05D000964 4.6e-09 65.9 117 29.9
HanXRQChr13g0406941 Helianthus annuus HOM05D001158 ORTHO05D000964 6.0e-09 65.5 112 33.9
Lsat_1_v5_gn_5_154020 Lactuca sativa HOM05D001158 ORTHO05D000964 7.9e-09 65.1 115 33.9
PSO339G3661 Papaver somniferum HOM05D001158 ORTHO05D000964 7.9e-09 65.1 130 30.8
PSO384G1026 Papaver somniferum HOM05D001158 ORTHO05D000964 7.9e-09 65.1 130 30.8
Nn2g11124 Nelumbo nucifera HOM05D001158 ORTHO05D000964 1.0e-08 64.7 111 34.2
GSVIVG01016533001 Vitis vinifera HOM05D001158 ORTHO05D000964 1.0e-08 64.7 110 32.7
CANSAT56G1341 Cannabis sativa HOM05D001158 ORTHO05D000964 1.3e-08 64.3 112 31.2
Cpa.g.sc18.254 Carica papaya HOM05D000001 ORTHO05D011176 1.3e-08 64.3 45 71.1
CANSAT56G3988 Cannabis sativa HOM05D001158 ORTHO05D000964 1.8e-08 63.9 112 31.2
Glyma.02G247900 Glycine max HOM05D001158 ORTHO05D000964 3.0e-08 63.2 112 33.9
Phvul.008G232600 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 3.0e-08 63.2 113 33.6
Haze_17075 Corylus avellana HOM05D001158 ORTHO05D000964 3.9e-08 62.8 112 31.2
Duzib138G1394 Durio zibethinus HOM05D000001 ORTHO05D011176 3.9e-08 62.8 39 64.1
Thecc.01G359400 Theobroma cacao HOM05D000001 ORTHO05D011176 3.9e-08 62.8 46 63.0
CiPaw.02G184700 Carya illinoinensis HOM05D001158 ORTHO05D000964 5.1e-08 62.4 112 31.2
PSO339G3324 Papaver somniferum HOM05D001158 ORTHO05D000964 6.7e-08 62.0 110 30.9
PSO384G0441 Papaver somniferum HOM05D001158 ORTHO05D000964 8.7e-08 61.6 109 33.0
PSO384G0672 Papaver somniferum HOM05D001158 ORTHO05D000964 8.7e-08 61.6 109 31.2
vmacro07177 Vaccinium macrocarpon HOM05D001158 ORTHO05D000964 8.7e-08 61.6 126 34.1
Duzib068G0027 Durio zibethinus HOM05D001158 ORTHO05D000964 1.1e-07 61.2 128 31.2
CANSAT56G0809 Cannabis sativa HOM05D001158 ORTHO05D000964 1.5e-07 60.8 112 29.5
Phvul.008G232800 Phaseolus vulgaris HOM05D001158 ORTHO05D000964 1.5e-07 60.8 112 32.1
TPR.G3507 Trifolium pratense HOM05D001158 ORTHO05D000964 1.5e-07 60.8 112 31.2
Cfa001467 Carpinus fangiana HOM05D001158 ORTHO05D000964 1.9e-07 60.5 112 30.4
FvH4_7g22610 Fragaria vesca HOM05D001158 ORTHO05D000964 1.9e-07 60.5 112 30.4
FAN01G3010 Fragaria x ananassa HOM05D001158 ORTHO05D000964 1.9e-07 60.5 112 30.4
FAN03G0977 Fragaria x ananassa HOM05D001158 ORTHO05D000964 1.9e-07 60.5 112 30.4
FAN03G2312 Fragaria x ananassa HOM05D001158 ORTHO05D000964 1.9e-07 60.5 112 30.4
FAN06G3401 Fragaria x ananassa HOM05D001158 ORTHO05D000964 1.9e-07 60.5 112 30.4
Solyc01g094600.2 Solanum lycopersicum HOM05D000001 ORTHO05D011176 1.9e-07 60.5 44 56.8
Atru.chr5.491 Acer truncatum HOM05D000001 ORTHO05D011176 2.5e-07 60.1 81 42.0
Ca_05893_v3 Cicer arietinum L. HOM05D001158 ORTHO05D000964 2.5e-07 60.1 112 31.2
Cc02_g37980 Coffea canephora HOM05D000001 ORTHO05D011176 2.5e-07 60.1 47 61.7
MD07G1199800 Malus domestica HOM05D001158 ORTHO05D000964 2.5e-07 60.1 113 31.0
Nn1g01531 Nelumbo nucifera HOM05D000001 ORTHO05D011176 3.3e-07 59.7 144 33.3
Nn2g11121 Nelumbo nucifera HOM05D001158 ORTHO05D000964 3.3e-07 59.7 112 35.7
Sc01g0003430 Simmondsia chinensis HOM05D000001 ORTHO05D011176 3.3e-07 59.7 47 55.3
VMungo0647G2054 Vigna mungo HOM05D001158 ORTHO05D000964 3.3e-07 59.7 112 31.2
FAN01G1962 Fragaria x ananassa HOM05D001158 ORTHO05D000964 4.3e-07 59.3 110 30.0
Gohir.D12G112200 Gossypium hirsutum HOM05D000001 ORTHO05D011176 4.3e-07 59.3 43 60.5
PSO339G3820 Papaver somniferum HOM05D001158 ORTHO05D000964 4.3e-07 59.3 112 32.1
FAN04G0969 Fragaria x ananassa HOM05D001158 ORTHO05D000964 5.6e-07 58.9 107 33.6
Manes.01G257100 Manihot esculenta HOM05D000001 ORTHO05D011176 5.6e-07 58.9 52 57.7
Psat2g041560 Pisum sativum HOM05D001158 ORTHO05D000964 5.6e-07 58.9 110 30.9
PGSC0003DMG400000039 Solanum tuberosum HOM05D000001 ORTHO05D011176 5.6e-07 58.9 44 56.8
Sed0015047 Sechium edule HOM05D001158 ORTHO05D000964 7.4e-07 58.5 110 31.8
MD01G1135100 Malus domestica HOM05D001158 ORTHO05D000964 9.6e-07 58.2 127 30.7
Peaxi162Scf00020g00031 Petunia axillaris HOM05D000001 ORTHO05D011176 9.6e-07 58.2 47 53.2
Prupe.2G236500 Prunus persica HOM05D001158 ORTHO05D000964 9.6e-07 58.2 113 30.1
HPP92_019354 Vanilla planifolia HOM05D001158 ORTHO05D000964 9.6e-07 58.2 113 31.0
Lalb_Chr10g0104551 Lupinus albus HOM05D001158 ORTHO05D000964 1.3e-06 57.8 110 30.9
MBI18_g04355_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D011176 1.3e-06 57.8 41 58.5
CDE09G0461 Ceratophyllum demersum HOM05D001158 ORTHO05D000964 1.6e-06 57.4 109 31.2
LjContig00141g0001022 Lotus japonicus HOM05D001158 ORTHO05D000964 1.6e-06 57.4 112 31.2
Nitab4.5_0011066g0010 Nicotiana tabacum HOM05D000001 ORTHO05D011176 1.6e-06 57.4 47 53.2
Potri.010G203100 Populus trichocarpa HOM05D001158 ORTHO05D000964 1.6e-06 57.4 112 29.5
Hund16082 Selenicereus undatus HOM05D001158 ORTHO05D000964 1.6e-06 57.4 111 34.2
Sopen04g005720 Solanum pennellii HOM05D001158 ORTHO05D000964 1.6e-06 57.4 123 31.7
Actinidia02942 Actinidia chinensis HOM05D000370 ORTHO05D001366 2.1e-06 57.0 120 28.3
Actinidia20906 Actinidia chinensis HOM05D000001 ORTHO05D011176 2.1e-06 57.0 43 53.5
Gorai.008G121600 Gossypium raimondii HOM05D000001 ORTHO05D011176 2.1e-06 57.0 43 58.1
Lalb_Chr17g0346211 Lupinus albus HOM05D001158 ORTHO05D000964 2.8e-06 56.6 112 29.5
Sabra10G0156700 Salix brachista HOM05D001158 ORTHO05D000964 2.8e-06 56.6 113 31.0
MSTRG.13833 Avicennia marina HOM05D001158 ORTHO05D000964 3.6e-06 56.2 107 34.6
DCAR_015987 Daucus carota HOM05D000001 ORTHO05D011176 3.6e-06 56.2 47 59.6
Sopen01g038410 Solanum pennellii HOM05D000001 ORTHO05D011176 3.6e-06 56.2 44 54.5
Aqoxy4G02888 Aquilegia oxysepala HOM05D001158 ORTHO05D000964 4.8e-06 55.8 112 30.4
CDE09G0857 Ceratophyllum demersum HOM05D001158 ORTHO05D000964 4.8e-06 55.8 110 32.7
FvH4_5g01841 Fragaria vesca HOM05D001158 ORTHO05D000964 4.8e-06 55.8 107 32.7
FAN08G0932 Fragaria x ananassa HOM05D001158 ORTHO05D000964 4.8e-06 55.8 107 32.7
CiPaw.01G056000 Carya illinoinensis HOM05D001158 ORTHO05D000964 6.2e-06 55.5 107 32.7
Manes.02G025000 Manihot esculenta HOM05D001158 ORTHO05D000964 6.2e-06 55.5 111 31.5
Hund16081 Selenicereus undatus HOM05D001158 ORTHO05D000964 6.2e-06 55.5 114 34.2
ATR0680G245 Amborella trichopoda HOM05D001158 ORTHO05D000964 8.1e-06 55.1 110 34.5


User provided reference genes

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