Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.1e-145 520.0 270 100.0
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.6e-136 489.6 272 93.8
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 3.5e-136 488.4 272 93.4
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 2.3e-132 475.7 270 90.7
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 2.6e-107 392.5 270 76.7
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 5.8e-107 391.3 270 75.9
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 8.4e-106 387.5 271 75.3
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 1.4e-105 386.7 266 75.6
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 2.4e-105 386.0 270 75.6
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 4.2e-105 385.2 266 74.8
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.2e-104 383.6 270 74.1
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.6e-104 383.3 270 74.1
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 2.1e-104 382.9 273 75.1
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.7e-104 382.5 274 75.2
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.5e-104 382.1 274 75.5
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 3.5e-104 382.1 266 75.9
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.6e-104 381.7 271 74.5
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 6.7e-103 377.9 261 72.4
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 8.7e-103 377.5 271 74.5
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.1e-102 377.1 270 74.1
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.9e-102 376.3 270 73.0
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 4.3e-102 375.2 272 74.3
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 4.3e-102 375.2 266 75.6
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 5.6e-102 374.8 274 74.5
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 7.4e-102 374.4 269 75.1
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 9.6e-102 374.0 269 74.3
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 9.6e-102 374.0 266 73.3
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 4.8e-101 371.7 274 71.9
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 6.2e-101 371.3 272 74.3
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.8e-100 369.8 266 71.4
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.8e-100 369.8 271 74.2
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 2.4e-100 369.4 270 70.7
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 4.0e-100 368.6 272 70.6
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.0e-100 368.6 273 70.3
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 5.3e-100 368.2 275 71.6
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 9.0e-100 367.5 275 70.9
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 2.0e-99 366.3 270 72.2
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.5e-99 365.2 265 72.1
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 4.5e-99 365.2 265 72.1
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 5.8e-99 364.8 271 70.8
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 5.8e-99 364.8 270 74.1
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 5.8e-99 364.8 270 71.1
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 3.8e-98 362.1 269 71.0
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 8.4e-98 360.9 267 69.3
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.9e-97 359.8 270 71.5
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.9e-97 359.8 270 71.5
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 5.5e-97 358.2 267 70.8
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.2e-96 357.1 273 70.0
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 2.1e-96 356.3 268 69.0
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 1.0e-95 354.0 270 72.6
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 3.9e-95 352.1 272 69.9
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 5.1e-95 351.7 275 67.6
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 8.7e-95 350.9 272 69.5
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-94 350.5 268 71.6
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-94 350.5 268 71.6
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.9e-94 349.7 273 67.4
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 2.5e-94 349.4 272 68.0
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 2.5e-94 349.4 268 71.3
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 3.3e-94 349.0 272 68.4
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.3e-94 349.0 268 71.3
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.3e-94 349.0 268 71.3
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 4.3e-94 348.6 268 71.3
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 4.3e-94 348.6 266 69.2
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.7e-94 348.2 271 68.3
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 7.4e-94 347.8 272 68.0
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 7.4e-94 347.8 267 68.2
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.6e-94 347.4 268 70.9
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 9.6e-94 347.4 270 67.0
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.1e-93 346.3 273 68.1
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 2.1e-93 346.3 272 67.6
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 2.1e-93 346.3 272 67.6
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 3.7e-93 345.5 272 68.0
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 6.2e-93 344.7 273 66.7
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 8.2e-93 344.4 267 70.8
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.1e-92 344.0 266 69.9
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.1e-92 344.0 266 69.5
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 1.4e-92 343.6 268 68.7
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 2.4e-92 342.8 267 67.4
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 3.1e-92 342.4 272 66.2
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 5.3e-92 341.7 279 67.4
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 9.0e-92 340.9 270 67.0
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 9.0e-92 340.9 269 67.3
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 9.0e-92 340.9 266 68.4
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 3.4e-91 339.0 266 68.0
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 5.0e-90 335.1 266 65.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 8.4e-90 334.3 273 65.9
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 1.1e-89 334.0 224 73.2
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.5e-88 328.9 257 68.5
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.0e-87 327.4 312 60.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.0e-87 327.4 257 68.1
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 5.7e-86 321.6 274 63.1
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.3e-85 320.5 262 67.2
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.3e-85 320.5 262 67.2
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.7e-85 318.9 239 67.8
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.8e-84 316.6 249 66.3
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.5e-83 313.5 266 66.5
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 4.5e-83 312.0 216 72.2
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 5.9e-83 311.6 270 64.1
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 7.7e-83 311.2 218 71.6
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 9.4e-81 304.3 183 82.5
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 1.3e-77 293.9 215 66.5
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.8e-76 290.0 242 64.5
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.5e-75 287.0 246 59.3
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 7.7e-75 284.6 269 59.5
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 4.2e-73 278.9 227 64.8
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.1e-68 261.2 199 69.8
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 5.9e-67 258.5 238 60.5
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 5.0e-66 255.4 269 51.7
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.1e-65 254.2 204 67.6
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.1e-65 254.2 204 67.6
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.6e-64 250.4 203 57.6
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 4.4e-62 242.3 214 53.3
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.7e-61 240.4 180 62.2
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.8e-61 239.6 244 51.2
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 7.7e-59 231.5 179 73.2
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 2.8e-53 213.0 142 71.1
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 7.7e-51 204.9 133 78.2
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 2.9e-42 176.4 153 52.3
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 6.1e-40 168.7 115 75.7
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 8.0e-40 168.3 162 48.1
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 3.0e-39 166.4 163 60.7
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 6.8e-39 165.2 270 41.9
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 6.8e-39 165.2 270 41.9
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.2e-38 164.5 270 41.9
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 2.6e-38 163.3 115 72.2
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 4.4e-30 136.0 89 76.4
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 3.2e-28 129.8 179 38.5
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.9e-25 120.6 76 80.3
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.2e-22 111.3 70 77.1
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 3.9e-18 96.3 70 68.6
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 2.8e-16 90.1 156 31.4
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.4e-14 83.2 59 69.5
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 2.7e-11 73.6 60 61.7
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.1e-10 69.3 92 51.1
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 6.6e-10 68.9 102 42.2
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 1.9e-09 67.4 39 82.1
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 3.4e-06 56.6 147 28.6
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 5.8e-06 55.8 52 59.6


User provided reference genes

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