Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 0.0e+00 2077.0 1058 100.0
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 0.0e+00 1873.2 1063 89.4
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 0.0e+00 1867.0 1063 90.0
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 0.0e+00 1668.7 1068 80.5
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 0.0e+00 1598.9 1069 79.0
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 5.9e-256 888.3 1128 49.1
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 6.2e-253 878.2 1106 48.8
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 1.6e-248 863.6 1109 48.5
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 4.9e-242 842.0 1111 47.9
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 5.8e-235 818.5 1111 46.7
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 3.5e-232 809.3 1106 46.7
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 2.3e-231 806.6 1076 46.7
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 1.6e-221 773.9 1109 46.4
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.7e-216 756.5 1104 45.4
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.0e-215 754.6 1107 45.0
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 2.5e-214 750.0 1123 44.2
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.3e-214 749.6 1122 44.0
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 5.6e-214 748.8 1121 43.7
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 6.2e-213 745.3 1120 44.1
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 6.2e-213 745.3 1121 43.7
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 6.2e-213 745.3 1111 45.6
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 2.4e-212 743.4 1114 44.6
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 6.9e-212 741.9 1105 45.2
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 9.0e-212 741.5 1110 45.0
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 9.9e-211 738.0 1107 44.7
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.7e-210 737.3 1122 43.7
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.9e-210 736.5 1123 43.9
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 4.9e-210 735.7 1103 44.6
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 9.6e-206 721.5 1110 45.1
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 1.6e-205 720.7 1110 45.0
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 2.8e-205 719.9 1122 44.3
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 6.9e-204 715.3 1114 44.4
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 4.6e-200 702.6 1111 42.7
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 1.0e-199 701.4 1108 42.7
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 1.3e-199 701.0 1112 43.5
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 2.3e-199 700.3 1114 44.0
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 8.7e-199 698.4 1112 42.5
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 1.1e-198 698.0 1136 43.4
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 8.2e-197 691.8 1138 41.4
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 1.5e-195 687.6 1120 43.6
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 3.4e-195 686.4 1119 43.7
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 4.5e-195 686.0 1121 43.8
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.0e-194 684.9 1120 43.6
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 8.4e-194 681.8 1104 43.5
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 8.4e-194 681.8 1105 43.2
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 1.4e-193 681.0 1109 42.1
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 1.9e-193 680.6 1098 43.4
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 2.5e-193 680.2 977 45.9
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 4.2e-193 679.5 1109 43.8
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 7.4e-190 668.7 1103 43.4
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 5.3e-188 662.5 1101 41.7
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.2e-184 651.4 1100 41.2
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 6.7e-183 645.6 1008 43.8
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 7.4e-182 642.1 1103 42.7
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 6.3e-181 639.0 1112 40.3
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 1.4e-180 637.9 1072 42.6
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 2.4e-180 637.1 1148 40.2
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 5.3e-180 636.0 1101 40.9
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 1.5e-179 634.4 1103 42.2
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 5.0e-178 629.4 1105 42.4
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 6.5e-178 629.0 1109 40.7
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 3.2e-177 626.7 1103 40.8
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 3.9e-175 619.8 1075 41.6
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.0e-170 605.1 1119 41.0
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 1.0e-170 605.1 1088 38.9
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 1.3e-170 604.7 1111 40.4
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 4.2e-169 599.7 1112 40.5
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 1.6e-168 597.8 1107 39.3
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 4.7e-168 596.3 1073 39.9
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 4.0e-167 593.2 1109 38.7
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 7.0e-164 582.4 1076 38.7
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 1.2e-163 581.6 1226 37.4
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 2.2e-162 577.4 1083 39.6
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 3.0e-159 567.0 1098 39.3
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 2.0e-158 564.3 1116 39.4
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.1e-156 558.5 924 41.7
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 9.1e-156 555.4 1110 39.0
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 1.3e-154 551.6 1118 38.3
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 1.5e-153 548.1 1111 38.9
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 2.5e-153 547.4 1104 38.2
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 2.6e-150 537.3 1102 38.0
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 7.5e-150 535.8 1104 37.7
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.7e-149 534.6 1106 38.1
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.8e-148 531.2 1102 38.7
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.2e-147 528.5 1101 37.8
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 1.7e-146 524.6 1099 37.5
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 2.3e-146 524.2 1109 37.6
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 6.1e-144 516.2 1056 37.1
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 1.8e-143 514.6 1086 37.7
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 6.8e-143 512.7 1092 37.3
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.2e-142 511.9 1090 37.6
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 4.4e-142 510.0 1115 36.8
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 8.3e-141 505.8 1106 37.3
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 4.1e-140 503.4 1177 34.2
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 2.0e-139 501.1 1104 35.9
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.1e-136 491.1 1047 37.6
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 1.0e-135 488.8 1071 36.5
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.0e-135 488.8 1047 37.4
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 4.0e-135 486.9 1078 36.5
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 5.2e-135 486.5 1100 36.4
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 2.0e-134 484.6 1091 36.2
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 3.2e-132 477.2 1120 35.7
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 4.6e-131 473.4 1084 36.2
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 1.5e-129 468.4 1094 37.2
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 5.2e-127 459.9 1118 35.2
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 1.2e-126 458.8 1105 36.3
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 2.2e-125 454.5 1085 36.8
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 8.6e-122 442.6 1089 35.3
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 3.3e-121 440.7 1108 34.3
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 9.5e-121 439.1 1076 35.5
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.1e-120 438.0 1072 34.4
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 3.6e-120 437.2 1077 34.6
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.2e-118 432.2 1008 37.0
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 2.9e-117 427.6 1089 34.8
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 9.6e-113 412.5 1144 33.2
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.9e-109 401.0 1078 34.1
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 3.8e-109 400.6 1090 34.4
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 4.9e-109 400.2 1092 34.0
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 1.4e-108 398.7 1090 33.9
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 1.2e-107 395.6 920 35.0
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 8.7e-106 389.4 1071 34.6
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 5.6e-105 386.7 883 36.8
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 2.4e-103 381.3 1095 34.4
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 5.3e-103 380.2 1095 34.2
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 3.0e-98 364.4 1097 32.9
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.1e-97 362.5 1072 31.8
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 1.3e-96 359.0 1096 32.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.8e-96 357.8 1094 32.7
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 2.8e-96 357.8 1094 32.7
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 6.9e-95 353.2 1067 32.5
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.5e-94 352.1 1090 31.3
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 9.9e-94 349.4 1071 33.3
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 1.2e-91 342.4 536 43.1
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 8.7e-90 336.3 719 37.1
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 1.0e-82 312.8 662 37.3
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 1.9e-81 308.5 563 40.5
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 2.4e-79 301.6 1073 30.7
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 6.1e-75 287.0 1135 29.0
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 2.5e-73 281.6 480 41.5
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 8.2e-72 276.6 1004 31.2
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 8.8e-66 256.5 523 39.6
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 8.2e-64 250.0 1047 30.1
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.0e-62 245.4 632 32.9
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 2.1e-59 235.3 542 35.1
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 1.3e-56 226.1 229 57.6
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 9.7e-49 199.9 598 32.6
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.7e-46 191.8 278 42.8
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 5.4e-39 167.5 1123 26.0
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 5.4e-39 167.5 190 56.3
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 8.6e-37 160.2 319 37.9
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 1.5e-36 159.5 520 28.8
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 5.2e-34 151.0 846 27.3
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.6e-33 148.7 330 37.3
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 1.8e-31 142.5 322 36.3
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 5.9e-30 137.5 169 49.1
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 3.4e-25 121.7 221 37.6
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 4.6e-22 111.3 818 26.3
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 6.0e-22 110.9 305 34.1
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 3.0e-21 108.6 318 32.4
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 5.6e-20 104.4 285 36.1
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 1.1e-18 100.1 379 30.6
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 2.3e-18 99.0 258 34.9
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 6.8e-18 97.4 343 32.7
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 8.9e-18 97.1 265 34.0
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.2e-17 96.7 359 30.9
Duzib268G1133 Durio zibethinus HOM05D003611 ORTHO05D004281 4.4e-17 94.7 173 35.8
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.7e-16 92.8 237 35.4
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 3.2e-15 88.6 896 23.2
Hma1.2p1_0623F.1_g191005 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 4.1e-15 88.2 156 41.7
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 4.1e-15 88.2 781 24.1
Dinv32513 Davidia involucrata HOM05D003611 ORTHO05D004281 7.0e-15 87.4 81 56.8
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 9.2e-15 87.0 223 35.0
Oeu054339.1 Olea europaea HOM05D003611 ORTHO05D004281 3.0e-13 82.0 241 33.2
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 8.6e-13 80.5 248 33.5
HPP92_002605 Vanilla planifolia HOM05D046274 ORTHO05D004281 4.7e-11 74.7 406 26.6
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 1.2e-09 70.1 263 28.9
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 2.6e-09 68.9 306 30.4
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 4.4e-09 68.2 236 33.1
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 1.7e-08 66.2 285 26.7
BcaC03g16054 Brassica carinata HOM05D003611 ORTHO05D004281 1.4e-07 63.2 83 41.0
Sabra04G0048100 Salix brachista HOM05D003611 ORTHO05D011897 1.9e-07 62.8 298 26.8
RcHm_v2.0_Chr1g0378421 Rosa chinensis HOM05D010729 ORTHO05D011897 7.1e-07 60.8 267 26.6
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 3.5e-06 58.5 296 25.7
Lalb_Chr04g0259221 Lupinus albus HOM05D003611 ORTHO05D004281 4.6e-06 58.2 99 36.4


User provided reference genes

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