Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 4.6e-152 541.2 271 100.0
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 9.7e-70 267.7 271 57.2
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 2.6e-62 243.0 269 52.8
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 3.6e-56 222.6 267 50.6
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 7.3e-41 171.8 277 39.0
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 1.6e-40 170.6 271 39.5
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 6.8e-39 165.2 266 39.8
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 8.9e-39 164.9 273 39.6
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 5.8e-38 162.2 271 38.0
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.7e-37 159.5 271 37.3
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 3.7e-37 159.5 266 37.6
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 3.7e-37 159.5 273 38.5
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 6.4e-37 158.7 154 51.9
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 1.1e-36 157.9 273 37.7
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.1e-36 157.9 273 37.7
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 1.1e-36 157.9 273 39.6
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.4e-36 157.5 275 38.2
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 1.4e-36 157.5 154 50.0
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 4.1e-36 156.0 269 37.2
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 7.0e-36 155.2 154 51.9
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 7.0e-36 155.2 269 36.4
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 1.6e-35 154.1 272 37.9
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 2.1e-35 153.7 272 37.9
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 2.1e-35 153.7 272 37.9
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 2.7e-35 153.3 273 38.1
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 2.7e-35 153.3 273 38.1
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 3.5e-35 152.9 273 37.7
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 3.5e-35 152.9 273 38.1
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 7.8e-35 151.8 273 36.3
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 1.7e-34 150.6 269 36.1
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 3.0e-34 149.8 272 37.1
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 3.0e-34 149.8 269 36.4
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 3.9e-34 149.4 272 35.7
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 3.9e-34 149.4 154 51.9
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 5.1e-34 149.1 269 37.2
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 6.6e-34 148.7 272 34.2
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 6.6e-34 148.7 153 49.7
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 6.6e-34 148.7 153 49.7
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 6.6e-34 148.7 153 49.7
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 6.6e-34 148.7 153 49.7
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 8.6e-34 148.3 265 37.0
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 1.1e-33 147.9 266 36.8
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 1.5e-33 147.5 272 36.4
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 1.9e-33 147.1 154 46.8
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 4.3e-33 146.0 154 49.4
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 4.3e-33 146.0 271 37.3
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 5.6e-33 145.6 154 46.8
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 5.6e-33 145.6 272 36.0
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 7.3e-33 145.2 271 34.7
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 7.3e-33 145.2 154 47.4
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 7.3e-33 145.2 271 35.8
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 9.5e-33 144.8 272 36.8
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 1.2e-32 144.4 154 48.1
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.2e-32 144.4 271 35.1
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 1.6e-32 144.1 272 34.9
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 1.6e-32 144.1 273 37.7
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.6e-32 144.1 272 37.1
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 3.6e-32 142.9 266 35.0
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 4.7e-32 142.5 154 48.7
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 8.1e-32 141.7 272 34.6
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.4e-31 141.0 121 55.4
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 1.4e-31 141.0 152 46.1
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 3.1e-31 139.8 271 34.7
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 4.0e-31 139.4 272 34.9
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 4.0e-31 139.4 272 34.9
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 4.0e-31 139.4 272 34.9
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 4.0e-31 139.4 267 36.0
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 5.2e-31 139.0 115 59.1
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 2.0e-30 137.1 154 45.5
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 2.6e-30 136.7 150 46.7
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 3.4e-30 136.3 272 33.8
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 4.4e-30 136.0 271 35.4
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 5.8e-30 135.6 272 34.2
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 7.5e-30 135.2 115 56.5
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 9.9e-30 134.8 251 36.3
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 1.3e-29 134.4 269 35.7
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 1.3e-29 134.4 272 36.0
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 1.3e-29 134.4 154 45.5
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 1.7e-29 134.0 271 35.1
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 2.2e-29 133.7 157 44.6
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 2.2e-29 133.7 152 46.7
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 3.7e-29 132.9 273 35.2
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 3.7e-29 132.9 249 36.1
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 4.9e-29 132.5 271 35.1
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 4.9e-29 132.5 269 33.8
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 4.9e-29 132.5 269 32.7
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 6.4e-29 132.1 150 45.3
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 6.4e-29 132.1 154 46.1
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 3.2e-28 129.8 249 35.7
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 7.1e-28 128.6 267 33.3
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 7.1e-28 128.6 193 40.4
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 4.6e-27 125.9 238 37.4
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 2.3e-26 123.6 238 36.1
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 6.6e-26 122.1 154 42.9
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 1.1e-25 121.3 269 32.3
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 1.5e-25 120.9 132 48.5
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 2.5e-25 120.2 154 38.3
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 3.6e-24 116.3 234 34.2
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 8.1e-24 115.2 154 38.3
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 6.8e-23 112.1 116 47.4
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.4e-22 109.4 85 61.2
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 1.3e-21 107.8 91 54.9
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 1.4e-20 104.4 96 52.1
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 3.2e-20 103.2 238 32.8
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 2.7e-19 100.1 127 36.2
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 3.5e-19 99.8 115 42.6
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 1.3e-18 97.8 154 31.8
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 3.3e-17 93.2 68 64.7
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 3.1e-15 86.7 154 35.1
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 2.4e-12 77.0 122 36.9
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 7.8e-11 72.0 68 51.5
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 5.1e-10 69.3 118 35.6
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 3.3e-09 66.6 176 27.8
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 1.6e-08 64.3 53 58.5
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 6.2e-08 62.4 57 50.9
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 1.8e-07 60.8 134 33.6


User provided reference genes

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