Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000610 Citrullus lanatus HOM05D006631 ORTHO05D008359 1.3e-151 539.7 269 100.0
CsaV3_3G007830 Cucumis sativus L. HOM05D006631 ORTHO05D008359 2.0e-139 499.2 269 91.4
MELO3C005999.2 Cucumis melo HOM05D006631 ORTHO05D008359 3.2e-137 491.9 298 84.2
Sed0011774 Sechium edule HOM05D006631 ORTHO05D008359 1.4e-113 413.3 269 78.8
Manes.05G019200 Manihot esculenta HOM05D006631 ORTHO05D008359 5.1e-111 404.8 273 76.6
Phvul.006G115700 Phaseolus vulgaris HOM05D006631 ORTHO05D008359 7.3e-110 401.0 279 74.2
Gohir.D11G103700 Gossypium hirsutum HOM05D006631 ORTHO05D008359 1.2e-109 400.2 272 73.9
Gorai.007G111000 Gossypium raimondii HOM05D006631 ORTHO05D008359 1.2e-109 400.2 272 73.9
RcHm_v2.0_Chr1g0360621 Rosa chinensis HOM05D006631 ORTHO05D008359 1.2e-109 400.2 276 73.2
TWI59G0463 Tripterygium wilfordii HOM05D006631 ORTHO05D008359 2.1e-109 399.4 273 74.7
Actinidia28101 Actinidia chinensis HOM05D006631 ORTHO05D008359 3.6e-109 398.7 273 75.1
Thecc.01G337000 Theobroma cacao HOM05D006631 ORTHO05D008359 3.6e-109 398.7 272 73.9
Glyma.19G258300 Glycine max HOM05D006631 ORTHO05D008359 6.2e-109 397.9 278 73.0
CiPaw.01G079400 Carya illinoinensis HOM05D006631 ORTHO05D008359 1.1e-108 397.1 273 75.5
Gohir.A11G099200 Gossypium hirsutum HOM05D006631 ORTHO05D008359 1.1e-108 397.1 272 73.5
FvH4_7g17240 Fragaria vesca HOM05D006631 ORTHO05D008359 1.4e-108 396.7 280 72.9
GSVIVG01027398001 Vitis vinifera HOM05D006631 ORTHO05D008359 1.8e-108 396.4 274 75.9
CANSAT56G2365 Cannabis sativa HOM05D006631 ORTHO05D008359 2.4e-108 396.0 276 71.0
Glyma.03G259400 Glycine max HOM05D006631 ORTHO05D008359 2.4e-108 396.0 278 74.1
Dinv34238 Davidia involucrata HOM05D006631 ORTHO05D008359 8.9e-108 394.0 274 74.8
Lalb_Chr19g0133561 Lupinus albus HOM05D006631 ORTHO05D008359 8.9e-108 394.0 274 73.4
Psat3g001400 Pisum sativum HOM05D006631 ORTHO05D008359 2.0e-107 392.9 275 73.5
QL08p046273 Quercus lobata HOM05D006631 ORTHO05D008359 2.6e-107 392.5 271 74.2
FAN06G3756 Fragaria x ananassa HOM05D006631 ORTHO05D008359 4.4e-107 391.7 282 72.3
Solyc01g096240.4 Solanum lycopersicum HOM05D006631 ORTHO05D008359 4.4e-107 391.7 277 74.0
COL.COLO4_06257 Corchorus olitorius HOM05D006631 ORTHO05D008359 5.8e-107 391.3 260 77.3
Sopen01g040000 Solanum pennellii HOM05D006631 ORTHO05D008359 9.9e-107 390.6 277 74.0
PGSC0003DMG400000125 Solanum tuberosum HOM05D006631 ORTHO05D008359 9.9e-107 390.6 277 74.4
Duzib138G0935 Durio zibethinus HOM05D006631 ORTHO05D008359 1.3e-106 390.2 272 72.4
Cfa003762 Carpinus fangiana HOM05D006631 ORTHO05D008359 1.7e-106 389.8 273 72.2
Prupe.2G193800 Prunus persica HOM05D006631 ORTHO05D008359 2.2e-106 389.4 272 71.7
Atru.chr5.731 Acer truncatum HOM05D006631 ORTHO05D008359 2.9e-106 389.0 274 73.4
FAN06G3280 Fragaria x ananassa HOM05D006631 ORTHO05D008359 2.9e-106 389.0 282 72.0
Ca_09530_v3 Cicer arietinum L. HOM05D006631 ORTHO05D008359 3.8e-106 388.7 274 73.4
Cpa.g.sc144.12 Carica papaya HOM05D006631 ORTHO05D008359 1.4e-105 386.7 272 71.7
Lj1g0014889 Lotus japonicus HOM05D006631 ORTHO05D008359 1.9e-105 386.3 274 73.0
Potri.014G102400 Populus trichocarpa HOM05D006631 ORTHO05D008359 3.2e-105 385.6 275 71.6
PSO063G1328 Papaver somniferum HOM05D006631 ORTHO05D008359 7.1e-105 384.4 276 71.0
PGR031G0416 Punica granatum HOM05D006631 ORTHO05D008359 7.1e-105 384.4 270 72.2
PSO782G2421 Papaver somniferum HOM05D006631 ORTHO05D008359 9.3e-105 384.0 274 71.5
Nn1g00373 Nelumbo nucifera HOM05D006631 ORTHO05D008359 2.7e-104 382.5 276 72.5
MD01G1086200 Malus domestica HOM05D006631 ORTHO05D008359 4.6e-104 381.7 273 71.1
MSTRG.4800 Avicennia marina HOM05D006631 ORTHO05D008359 1.0e-103 380.6 279 71.0
THA.LOC104817387 Tarenaya hassleriana HOM05D006631 ORTHO05D008359 1.7e-103 379.8 278 68.7
TAR375G0108 Trochodendron aralioides HOM05D006631 ORTHO05D008359 2.3e-103 379.4 275 70.9
SalBow5G1997 Salvia bowleyana HOM05D006631 ORTHO05D008359 3.0e-103 379.0 276 72.5
CSS0022670 Camellia sinensis var. sinensis HOM05D006631 ORTHO05D008359 6.6e-103 377.9 271 70.1
arahy.Tifrunner.gnm1.ann1.588I57 Arachis hypogaea HOM05D006631 ORTHO05D008359 1.5e-102 376.7 218 82.1
AUR62022720 Chenopodium quinoa HOM05D006631 ORTHO05D008359 1.9e-102 376.3 279 71.3
Hund16731 Selenicereus undatus HOM05D006631 ORTHO05D008359 4.3e-102 375.2 274 70.1
Rhsim01G0176500 Rhododendron simsii HOM05D006631 ORTHO05D008359 7.3e-102 374.4 230 80.4
Ciclev10021628m.g Citrus clementina HOM05D006631 ORTHO05D008359 1.3e-101 373.6 274 69.3
arahy.Tifrunner.gnm1.ann1.NC261Q Arachis hypogaea HOM05D006631 ORTHO05D008359 2.8e-101 372.5 273 70.3
Nitab4.5_0002527g0020 Nicotiana tabacum HOM05D006631 ORTHO05D008359 4.8e-101 371.7 279 70.3
Medtr7g117970 Medicago truncatula HOM05D006631 ORTHO05D008359 6.2e-101 371.3 275 70.5
ECA240G4795 Erigeron canadensis HOM05D006631 ORTHO05D008359 8.1e-101 370.9 270 71.5
Eucgr.D02642 Eucalyptus grandis HOM05D006631 ORTHO05D008359 2.4e-100 369.4 283 69.3
AUR62004534 Chenopodium quinoa HOM05D006631 ORTHO05D008359 5.3e-100 368.2 277 70.0
Sabra14G0075400 Salix brachista HOM05D006631 ORTHO05D008359 5.3e-100 368.2 201 87.1
Migut.N01525 Erythranthe guttata HOM05D006631 ORTHO05D008359 4.5e-99 365.2 225 78.7
Phvul.010G116700 Phaseolus vulgaris HOM05D006631 ORTHO05D008359 4.5e-99 365.2 269 70.3
AL5G44450 Arabidopsis lyrata HOM05D006631 ORTHO05D008359 5.8e-99 364.8 273 69.6
FAN03G0022 Fragaria x ananassa HOM05D006631 ORTHO05D008359 5.8e-99 364.8 268 69.8
Aa31LG10G15890 Aethionema arabicum HOM05D006631 ORTHO05D008359 4.9e-98 361.7 261 70.5
FAN01G0947 Fragaria x ananassa HOM05D006631 ORTHO05D008359 4.9e-98 361.7 201 84.6
FAN10G3243 Fragaria x ananassa HOM05D006631 ORTHO05D008359 4.9e-98 361.7 201 84.6
Lj9A602T26 Lonicera japonica HOM05D006631 ORTHO05D008359 6.4e-98 361.3 302 65.9
MSTRG.28278 Avicennia marina HOM05D006631 ORTHO05D008359 8.4e-98 360.9 271 70.5
Peaxi162Scf00767g00111 Petunia axillaris HOM05D006631 ORTHO05D008359 2.4e-97 359.4 202 86.1
TPR.G4790 Trifolium pratense HOM05D006631 ORTHO05D008359 3.2e-97 359.0 281 67.3
AT3G61870 Arabidopsis thaliana HOM05D006631 ORTHO05D008359 5.4e-97 358.2 273 67.4
Thhalv10006166m.g Eutrema salsugineum HOM05D006631 ORTHO05D008359 9.3e-97 357.5 266 68.8
MBI04_g33414_MAGBIO Magnolia biondii HOM05D006631 ORTHO05D008359 1.2e-96 357.1 268 70.1
VMungo0540G1103 Vigna mungo HOM05D006631 ORTHO05D008359 1.2e-96 357.1 204 84.8
Nitab4.5_0000307g0140 Nicotiana tabacum HOM05D006631 ORTHO05D008359 2.1e-96 356.3 265 70.6
C08p36710 Brassica napus HOM05D006631 ORTHO05D008359 2.7e-96 355.9 266 68.0
BolC8t51253H Brassica oleracea HOM05D006631 ORTHO05D008359 2.7e-96 355.9 266 68.0
Haze_15698 Corylus avellana HOM05D006631 ORTHO05D008359 2.7e-96 355.9 201 84.6
A09p53900 Brassica napus HOM05D006631 ORTHO05D008359 4.6e-96 355.1 226 76.1
BraA09t40806Z Brassica rapa HOM05D006631 ORTHO05D008359 4.6e-96 355.1 226 76.1
Carub.0005s2861 Capsella rubella HOM05D006631 ORTHO05D008359 1.0e-95 354.0 273 67.4
CAN.G1415.2 Capsicum annuum HOM05D006631 ORTHO05D008359 1.3e-95 353.6 202 85.1
Ah.05g179220 Amaranthus hybridus HOM05D006631 ORTHO05D008359 2.3e-95 352.8 274 66.1
Sp5g01490 Schrenkiella parvula HOM05D006631 ORTHO05D008359 2.3e-95 352.8 261 68.2
CARHR172210 Cardamine hirsuta HOM05D006631 ORTHO05D008359 6.7e-95 351.3 274 67.5
vmacro12589 Vaccinium macrocarpon HOM05D006631 ORTHO05D008359 7.4e-94 347.8 208 83.2
Lalb_Chr17g0342841 Lupinus albus HOM05D006631 ORTHO05D008359 4.8e-93 345.1 271 65.7
Glyma.16G021600 Glycine max HOM05D006631 ORTHO05D008359 8.1e-93 344.4 275 66.2
CDE07G1250 Ceratophyllum demersum HOM05D006631 ORTHO05D008359 3.1e-92 342.4 261 67.8
VMungo0331G0918 Vigna mungo HOM05D006631 ORTHO05D008359 3.1e-92 342.4 236 71.2
SEGI_25065 Sequoiadendron giganteum HOM05D006631 ORTHO05D008359 5.3e-92 341.7 208 80.8
Lsat_1_v5_gn_3_141021 Lactuca sativa HOM05D006631 ORTHO05D008359 1.2e-91 340.5 272 66.2
Sc23g0001960 Simmondsia chinensis HOM05D006631 ORTHO05D008359 1.3e-90 337.0 202 80.7
HanXRQChr03g0094051 Helianthus annuus HOM05D006631 ORTHO05D008359 1.1e-89 334.0 274 65.7
HPP92_002500 Vanilla planifolia HOM05D006631 ORTHO05D008359 1.9e-89 333.2 278 65.8
Os02g0122500 Oryza sativa ssp. japonica HOM05D006631 ORTHO05D008359 2.7e-88 329.3 218 74.8
ATR0620G070 Amborella trichopoda HOM05D006631 ORTHO05D008359 1.8e-84 316.6 284 59.2
Oeu007870.1 Olea europaea HOM05D006631 ORTHO05D008359 1.8e-84 316.6 178 88.2
SMO143G0155 Selaginella moellendorffii HOM05D006631 ORTHO05D008359 3.4e-83 312.4 199 75.9
Mapoly0049s0137 Marchantia polymorpha HOM05D006631 ORTHO05D008359 7.6e-83 311.2 208 73.6
BcaC07g42601 Brassica carinata HOM05D006631 ORTHO05D008359 6.7e-79 298.1 276 60.1
Pp3c5_3210 Physcomitrium patens HOM05D006631 ORTHO05D008359 7.4e-78 294.7 215 70.7
FAN10G2512 Fragaria x ananassa HOM05D006631 ORTHO05D008359 1.1e-76 290.8 278 60.1
CBR_g37545 Chara braunii HOM05D006631 ORTHO05D008359 9.3e-73 277.7 198 69.7
EL10Ac1g00220 Beta vulgaris HOM05D006631 ORTHO05D008359 2.8e-69 266.2 214 65.0
arahy.Tifrunner.gnm1.ann1.S1C8P4 Arachis hypogaea HOM05D006631 ORTHO05D008359 2.4e-68 263.1 281 56.9
DCAR_008654 Daucus carota HOM05D006631 ORTHO05D008359 1.5e-67 260.4 163 76.7
MD07G1155100 Malus domestica HOM05D006631 ORTHO05D008359 1.5e-67 260.4 155 80.0
MCO07G366 Micromonas commoda HOM05D006631 ORTHO05D008359 1.0e-66 257.7 223 58.3
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 1.4e-65 253.8 157 78.3
arahy.Tifrunner.gnm1.ann1.GG2XE6 Arachis hypogaea HOM05D006631 ORTHO05D008359 7.9e-64 248.1 240 59.6
Cc02_g39740 Coffea canephora HOM05D006631 ORTHO05D008359 2.3e-63 246.5 202 61.9
Cre12.g519300 Chlamydomonas reinhardtii HOM05D006631 ORTHO05D008359 2.8e-61 239.6 212 59.0
CDE09G1080 Ceratophyllum demersum HOM05D006631 ORTHO05D008359 2.9e-58 229.6 252 48.8
PRCOL_00004956 Prasinoderma coloniale HOM05D006631 ORTHO05D008359 2.3e-55 219.9 193 55.4
CSS0025910 Camellia sinensis var. sinensis HOM05D006631 ORTHO05D008359 1.8e-52 210.3 116 85.3
AagrBONN_evm.TU.Sc2ySwM_362.2495 Anthoceros agrestis HOM05D006631 ORTHO05D008359 6.1e-48 195.3 111 83.8
unitig_8.g3405 Utricularia gibba HOM05D006631 ORTHO05D008359 6.1e-48 195.3 173 66.5
TAR374G1086 Trochodendron aralioides HOM05D000482 ORTHO05D000349 8.8e-39 164.9 211 46.9
TAR374G0170 Trochodendron aralioides HOM05D000482 ORTHO05D000349 1.6e-24 117.5 81 66.7
TAR374G1450 Trochodendron aralioides HOM05D000482 ORTHO05D000349 2.8e-24 116.7 184 41.8
unitig_22.g6820 Utricularia gibba HOM05D006631 ORTHO05D008359 5.6e-09 65.9 63 58.7
GSVIVG01001070001 Vitis vinifera HOM05D006631 ORTHO05D008359 1.6e-08 64.3 34 85.3


User provided reference genes

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