Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.3e-169 597.0 319 100.0
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.4e-99 366.3 326 66.0
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 5.8e-98 361.7 327 67.0
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 9.7e-61 238.0 325 50.2
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 4.7e-55 219.2 325 47.4
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 6.0e-26 122.5 322 35.7
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 7.1e-19 99.0 320 33.8
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.2e-18 98.2 325 33.8
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 7.8e-18 95.5 329 31.9
CsaV3_3G007820 Cucumis sativus L. HOM05D030996 ORTHO05D004349 8.1e-15 85.5 322 29.5
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 4.0e-14 83.2 236 32.6
Sed0027906 Sechium edule HOM05D030996 ORTHO05D004349 6.8e-14 82.4 310 30.3
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.5e-13 81.3 259 32.8
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.5e-13 81.3 252 29.4
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.4e-12 75.5 353 28.9
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.6e-10 71.2 119 41.2
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 3.5e-10 70.1 121 38.8
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 2.3e-09 67.4 226 32.3
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 5.1e-09 66.2 120 37.5
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 6.6e-09 65.9 115 40.0
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 6.6e-09 65.9 321 28.3
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 8.6e-09 65.5 330 28.2
Sed0013842 Sechium edule HOM05D004242 ORTHO05D004349 8.6e-09 65.5 76 52.6
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.5e-08 64.7 278 28.4
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.5e-08 63.9 202 31.2
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 4.3e-08 63.2 313 27.2
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 5.6e-08 62.8 50 56.0
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 7.3e-08 62.4 87 41.4
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.3e-08 62.4 361 26.9
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 7.3e-08 62.4 247 30.0
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 9.6e-08 62.0 220 29.5
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 9.6e-08 62.0 151 30.5
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 9.6e-08 62.0 120 35.8
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.2e-07 61.6 160 31.9
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.2e-07 61.6 338 27.8
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 1.2e-07 61.6 105 41.0
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.2e-07 61.6 238 29.8
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.1e-07 60.8 160 31.9
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 2.1e-07 60.8 106 35.8
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 2.1e-07 60.8 100 46.0
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.1e-07 60.8 148 33.8
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 2.8e-07 60.5 39 71.8
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 2.8e-07 60.5 258 27.1
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 2.8e-07 60.5 113 37.2
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 2.8e-07 60.5 369 25.7
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 3.6e-07 60.1 120 35.0
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 3.6e-07 60.1 114 36.0
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 3.6e-07 60.1 109 40.4
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 4.7e-07 59.7 118 34.7
MELO3C005998.2 Cucumis melo HOM05D030996 ORTHO05D004349 4.7e-07 59.7 234 29.9
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.7e-07 59.7 336 26.2
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 4.7e-07 59.7 108 36.1
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 6.2e-07 59.3 336 26.5
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 8.1e-07 58.9 251 28.3
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 8.1e-07 58.9 192 31.8
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 1.1e-06 58.5 220 28.2
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.1e-06 58.5 94 39.4
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.4e-06 58.2 316 28.5
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.4e-06 58.2 230 28.7
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 1.4e-06 58.2 347 25.9
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.4e-06 58.2 115 40.0
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 1.8e-06 57.8 38 68.4
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.8e-06 57.8 44 56.8
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 1.8e-06 57.8 44 56.8
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.8e-06 57.8 215 29.8
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 2.4e-06 57.4 330 27.0
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.4e-06 57.4 330 27.0
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.4e-06 57.4 330 27.0
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 2.4e-06 57.4 89 42.7
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 2.4e-06 57.4 112 37.5
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 2.4e-06 57.4 251 28.7
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 2.4e-06 57.4 224 31.7
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 3.1e-06 57.0 44 56.8
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 3.1e-06 57.0 246 28.9
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 4.0e-06 56.6 244 25.4
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 4.0e-06 56.6 335 27.5
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.0e-06 56.6 102 35.3
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.0e-06 56.6 387 26.1
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.0e-06 56.6 211 30.3
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.0e-06 56.6 211 28.9
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 4.0e-06 56.6 151 29.8
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 5.2e-06 56.2 104 34.6
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 5.2e-06 56.2 211 29.9
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 6.8e-06 55.8 220 28.6
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 6.8e-06 55.8 78 41.0
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.8e-06 55.8 291 27.5
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 6.8e-06 55.8 310 26.1
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 8.9e-06 55.5 293 27.6
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 8.9e-06 55.5 224 29.9
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.9e-06 55.5 378 25.9
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 8.9e-06 55.5 97 39.2


User provided reference genes

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