Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000560 Citrullus lanatus HOM05D005886 ORTHO05D007512 8.4e-44 179.9 85 100.0
ClCG08G008440 Citrullus lanatus HOM05D005886 ORTHO05D007512 1.0e-12 76.6 64 60.9
CsaV3_6G004430 Cucumis sativus L. HOM05D005886 ORTHO05D007512 1.2e-10 69.7 65 52.3
MBI11_g46414_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 1.2e-10 69.7 55 56.4
Sed0002183 Sechium edule HOM05D005886 ORTHO05D007512 1.2e-10 69.7 56 58.9
MELO3C019914.2 Cucumis melo HOM05D005886 ORTHO05D007512 1.6e-10 69.3 65 52.3
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 2.7e-10 68.6 66 50.0
MBI11_g01323_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 3.6e-10 68.2 55 54.5
vmacro07275 Vaccinium macrocarpon HOM05D005886 ORTHO05D007512 4.6e-10 67.8 54 59.3
AL7G19160 Arabidopsis lyrata HOM05D005886 ORTHO05D007512 6.1e-10 67.4 68 50.0
SalBow3G3384 Salvia bowleyana HOM05D005886 ORTHO05D007512 7.9e-10 67.0 57 56.1
Sc09g0004780 Simmondsia chinensis HOM05D005886 ORTHO05D007512 7.9e-10 67.0 65 52.3
Dinv03810 Davidia involucrata HOM05D005886 ORTHO05D007512 1.0e-09 66.6 56 53.6
Nn6g34619 Nelumbo nucifera HOM05D005886 ORTHO05D007512 1.0e-09 66.6 68 48.5
TAR623G1656 Trochodendron aralioides HOM05D005886 ORTHO05D007512 1.0e-09 66.6 58 50.0
AT4G32605 Arabidopsis thaliana HOM05D005886 ORTHO05D007512 1.8e-09 65.9 68 48.5
Rhsim03G0094200 Rhododendron simsii HOM05D005886 ORTHO05D007512 1.8e-09 65.9 58 51.7
Actinidia06678 Actinidia chinensis HOM05D005886 ORTHO05D007512 2.3e-09 65.5 55 52.7
A01p05780 Brassica napus HOM05D005886 ORTHO05D007512 2.3e-09 65.5 61 49.2
BraA01t00547Z Brassica rapa HOM05D005886 ORTHO05D007512 2.3e-09 65.5 61 49.2
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 2.3e-09 65.5 66 47.0
Manes.10G059400 Manihot esculenta HOM05D005886 ORTHO05D007512 2.3e-09 65.5 53 54.7
CARHR240580 Cardamine hirsuta HOM05D005886 ORTHO05D007512 3.0e-09 65.1 64 50.0
Thhalv10026176m.g Eutrema salsugineum HOM05D005886 ORTHO05D007512 3.0e-09 65.1 64 50.0
TWI63G1702 Tripterygium wilfordii HOM05D005886 ORTHO05D007512 3.0e-09 65.1 65 47.7
Prupe.2G074600 Prunus persica HOM05D005886 ORTHO05D007512 3.9e-09 64.7 68 47.1
BcaC09g52051 Brassica carinata HOM05D005886 ORTHO05D007512 5.1e-09 64.3 64 48.4
C01p06350 Brassica napus HOM05D005886 ORTHO05D007512 5.1e-09 64.3 64 48.4
BolC1t00631H Brassica oleracea HOM05D005886 ORTHO05D007512 5.1e-09 64.3 64 48.4
Carub.0007s0794 Capsella rubella HOM05D005886 ORTHO05D007512 5.1e-09 64.3 64 50.0
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 5.1e-09 64.3 55 52.7
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 5.1e-09 64.3 66 45.5
QL04p048796 Quercus lobata HOM05D005886 ORTHO05D007512 6.7e-09 63.9 64 50.0
CSS0026439 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 8.8e-09 63.5 53 54.7
Sp7g30380 Schrenkiella parvula HOM05D005886 ORTHO05D007512 8.8e-09 63.5 64 48.4
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 8.8e-09 63.5 55 50.9
Aqoxy1G00613 Aquilegia oxysepala HOM05D005886 ORTHO05D007512 1.1e-08 63.2 52 53.8
Ciclev10016560m.g Citrus clementina HOM05D005886 ORTHO05D007512 1.1e-08 63.2 59 52.5
Cc02_g09270 Coffea canephora HOM05D005886 ORTHO05D007512 1.1e-08 63.2 64 48.4
Eucgr.G02665 Eucalyptus grandis HOM05D005886 ORTHO05D007512 1.1e-08 63.2 66 47.0
FvH4_7g05420 Fragaria vesca HOM05D005886 ORTHO05D007512 1.1e-08 63.2 57 52.6
FAN01G0807 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.1e-08 63.2 57 52.6
Oeu025604.1 Olea europaea HOM05D005886 ORTHO05D007512 1.1e-08 63.2 55 49.1
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 1.1e-08 63.2 55 49.1
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 1.1e-08 63.2 55 49.1
Aa31sc91G60 Aethionema arabicum HOM05D005886 ORTHO05D007512 1.9e-08 62.4 64 48.4
Dinv04428 Davidia involucrata HOM05D005886 ORTHO05D007512 1.9e-08 62.4 56 48.2
Hma1.2p1_0098F.1_g048230 Hydrangea macrophylla HOM05D005886 ORTHO05D007512 1.9e-08 62.4 63 47.6
THA.LOC104803777 Tarenaya hassleriana HOM05D005886 ORTHO05D007512 1.9e-08 62.4 61 45.9
Migut.F00830 Erythranthe guttata HOM05D005886 ORTHO05D007512 2.5e-08 62.0 50 56.0
Peaxi162Scf00120g00720 Petunia axillaris HOM05D005886 ORTHO05D007512 2.5e-08 62.0 53 50.9
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 3.3e-08 61.6 56 50.0
Gorai.003G100800 Gossypium raimondii HOM05D005886 ORTHO05D007512 3.3e-08 61.6 53 50.9
PSO384G2277 Papaver somniferum HOM05D005886 ORTHO05D007512 3.3e-08 61.6 51 54.9
RcHm_v2.0_Chr1g0332231 Rosa chinensis HOM05D005886 ORTHO05D007512 3.3e-08 61.6 66 47.0
FvH4_7g05470 Fragaria vesca HOM05D005886 ORTHO05D007512 4.3e-08 61.2 57 50.9
FAN01G1003 Fragaria x ananassa HOM05D005886 ORTHO05D007512 4.3e-08 61.2 57 50.9
FAN03G3046 Fragaria x ananassa HOM05D005886 ORTHO05D007512 4.3e-08 61.2 57 50.9
FAN10G0591 Fragaria x ananassa HOM05D005886 ORTHO05D007512 4.3e-08 61.2 57 50.9
Hund07230 Selenicereus undatus HOM05D005886 ORTHO05D007512 4.3e-08 61.2 48 58.3
HPP92_013299 Vanilla planifolia HOM05D005886 ORTHO05D007512 4.3e-08 61.2 76 40.8
CSS0019543 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 5.7e-08 60.8 62 50.0
DCAR_025632 Daucus carota HOM05D005886 ORTHO05D007512 5.7e-08 60.8 58 48.3
Duzib205G1746 Durio zibethinus HOM05D005886 ORTHO05D007512 5.7e-08 60.8 52 51.9
Nitab4.5_0001781g0100 Nicotiana tabacum HOM05D005886 ORTHO05D007512 5.7e-08 60.8 53 50.9
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 5.7e-08 60.8 53 50.9
unitig_46.g18648 Utricularia gibba HOM05D005886 ORTHO05D007512 5.7e-08 60.8 63 46.0
HPP92_013285 Vanilla planifolia HOM05D005886 ORTHO05D007512 5.7e-08 60.8 76 40.8
Glyma.14G022800 Glycine max HOM05D005886 ORTHO05D007512 7.4e-08 60.5 47 57.4
Psat2g011680 Pisum sativum HOM05D005886 ORTHO05D007512 7.4e-08 60.5 47 57.4
PGR142G2015 Punica granatum HOM05D005886 ORTHO05D007512 7.4e-08 60.5 51 52.9
VMungo0647G0838 Vigna mungo HOM05D005886 ORTHO05D007512 7.4e-08 60.5 50 54.0
Glyma.02G291900 Glycine max HOM05D005886 ORTHO05D007512 9.7e-08 60.1 47 55.3
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 9.7e-08 60.1 50 52.0
arahy.Tifrunner.gnm1.ann1.G6ZNRX Arachis hypogaea HOM05D005886 ORTHO05D007512 1.3e-07 59.7 59 50.8
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 1.3e-07 59.7 47 57.4
PSO339G0105 Papaver somniferum HOM05D005886 ORTHO05D007512 1.3e-07 59.7 51 52.9
MSTRG.9023 Avicennia marina HOM05D005886 ORTHO05D007512 1.7e-07 59.3 52 50.0
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 2.2e-07 58.9 56 48.2
arahy.Tifrunner.gnm1.ann1.884D9P Arachis hypogaea HOM05D005886 ORTHO05D007512 2.2e-07 58.9 59 50.8
arahy.Tifrunner.gnm1.ann1.AJNI4B Arachis hypogaea HOM05D005886 ORTHO05D007512 2.2e-07 58.9 59 50.8
arahy.Tifrunner.gnm1.ann1.VD7X19 Arachis hypogaea HOM05D005886 ORTHO05D007512 2.2e-07 58.9 59 50.8
Phvul.008G268400 Phaseolus vulgaris HOM05D005886 ORTHO05D007512 2.2e-07 58.9 47 55.3
TPR.G1192 Trifolium pratense HOM05D005886 ORTHO05D007512 2.2e-07 58.9 59 50.8
Cpa.g.sc33.126 Carica papaya HOM05D005886 ORTHO05D007512 2.8e-07 58.5 53 47.2
COL.COLO4_37594 Corchorus olitorius HOM05D005886 ORTHO05D007512 2.8e-07 58.5 63 44.4
Lalb_Chr04g0248371 Lupinus albus HOM05D005886 ORTHO05D007512 2.8e-07 58.5 59 47.5
Potri.008G015600 Populus trichocarpa HOM05D005886 ORTHO05D007512 2.8e-07 58.5 72 40.3
CDE10G0808 Ceratophyllum demersum HOM05D005886 ORTHO05D007512 3.7e-07 58.2 51 49.0
Potri.010G244500 Populus trichocarpa HOM05D005886 ORTHO05D007512 4.8e-07 57.8 68 41.2
EL10Ac4g08740 Beta vulgaris HOM05D005886 ORTHO05D007512 6.3e-07 57.4 51 52.9
LjContig00272g0011155 Lotus japonicus HOM05D005886 ORTHO05D007512 8.2e-07 57.0 47 53.2
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 1.4e-06 56.2 49 46.9
Ca_30698_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 1.8e-06 55.8 47 53.2
FAN10G3562 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.8e-06 55.8 53 50.9
Zm00001eb216850 Zea mays HOM05D013194 ORTHO05D015061 2.4e-06 55.5 61 42.6
C03p87240 Brassica napus HOM05D005886 ORTHO05D007512 3.1e-06 55.1 52 48.1
BolC3t21025H Brassica oleracea HOM05D005886 ORTHO05D007512 3.1e-06 55.1 52 48.1
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 5.3e-06 54.3 55 49.1
ECA238G0088 Erigeron canadensis HOM05D005886 ORTHO05D007512 5.3e-06 54.3 57 47.4
Lsat_1_v5_gn_2_106281 Lactuca sativa HOM05D005886 ORTHO05D007512 5.3e-06 54.3 56 48.2
BcaC01g01011 Brassica carinata HOM05D005886 ORTHO05D007512 6.9e-06 53.9 52 48.1
HanXRQChr07g0194431 Helianthus annuus HOM05D005886 ORTHO05D007512 6.9e-06 53.9 57 47.4
ATR1127G050 Amborella trichopoda HOM05D005886 ORTHO05D007512 9.1e-06 53.5 54 44.4
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 9.1e-06 53.5 54 48.1


User provided reference genes

Program Settings