Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000460 Citrullus lanatus HOM05D000424 ORTHO05D000355 2.0e-91 339.3 206 100.0
CsaV3_3G007630 Cucumis sativus L. HOM05D000424 ORTHO05D000355 4.4e-46 188.7 148 87.8
Sed0000413 Sechium edule HOM05D000424 ORTHO05D000355 4.2e-41 172.2 158 81.6
AL6G25830 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 3.3e-25 119.4 165 60.6
AT5G15010 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 4.3e-25 119.0 163 38.0
CAN.G2.3 Capsicum annuum HOM05D000424 ORTHO05D000355 5.6e-25 118.6 152 43.4
Sopen07g013080 Solanum pennellii HOM05D000424 ORTHO05D000355 7.3e-25 118.2 150 44.7
Thhalv10015264m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.6e-24 117.1 167 61.7
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.6e-24 115.9 164 61.0
PGSC0003DMG400011668 Solanum tuberosum HOM05D000424 ORTHO05D000355 3.6e-24 115.9 147 44.2
Nitab4.5_0001911g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.0e-23 114.4 150 44.0
CARHR198300 Cardamine hirsuta HOM05D000424 ORTHO05D000355 4.0e-23 112.5 163 58.9
Medtr7g085100 Medicago truncatula HOM05D000424 ORTHO05D000355 4.0e-23 112.5 161 39.8
Carub.0006s1317 Capsella rubella HOM05D000424 ORTHO05D000355 1.5e-22 110.5 165 60.6
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 3.4e-22 109.4 122 42.6
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 3.4e-22 109.4 122 42.6
TPR.G5879 Trifolium pratense HOM05D000424 ORTHO05D000355 3.4e-22 109.4 160 48.1
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 4.4e-22 109.0 122 43.4
Cpa.g.sc676.3 Carica papaya HOM05D000424 ORTHO05D000355 5.8e-22 108.6 154 40.9
Oeu014921.1 Olea europaea HOM05D000424 ORTHO05D000355 1.3e-21 107.5 160 39.4
Atru.chr2.1259 Acer truncatum HOM05D000424 ORTHO05D000355 8.3e-21 104.8 156 38.5
Glyma.16G043600 Glycine max HOM05D000424 ORTHO05D000355 8.3e-21 104.8 160 38.8
CSS0043028 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.4e-20 104.0 167 38.9
Migut.H00188 Erythranthe guttata HOM05D000424 ORTHO05D000355 2.4e-20 103.2 164 59.8
Lj1P1139T38 Lonicera japonica HOM05D000424 ORTHO05D000355 3.2e-20 102.8 156 62.8
Dinv14598 Davidia involucrata HOM05D000424 ORTHO05D000355 4.1e-20 102.4 150 62.7
Eucgr.A02069 Eucalyptus grandis HOM05D007168 ORTHO05D000355 5.4e-20 102.1 153 50.3
Ciclev10019425m.g Citrus clementina HOM05D000424 ORTHO05D000355 9.2e-20 101.3 156 37.2
CANSAT78G1028 Cannabis sativa HOM05D000424 ORTHO05D000355 1.6e-19 100.5 162 60.5
FAN05G4971 Fragaria x ananassa HOM05D000424 ORTHO05D000355 2.0e-19 100.1 162 58.6
Peaxi162Scf00299g00310 Petunia axillaris HOM05D000424 ORTHO05D000355 2.0e-19 100.1 149 63.8
PGR042G0063 Punica granatum HOM05D000424 ORTHO05D000355 2.0e-19 100.1 148 64.2
MBI13_g05942_MAGBIO Magnolia biondii HOM05D007335 ORTHO05D009113 4.6e-19 99.0 65 66.2
Ca_08247_v3 Cicer arietinum L. HOM05D000558 ORTHO05D001857 3.9e-18 95.9 160 58.8
MD12G1000700 Malus domestica HOM05D000424 ORTHO05D000355 3.9e-18 95.9 155 59.4
FvH4_6g48380 Fragaria vesca HOM05D007168 ORTHO05D000355 5.0e-18 95.5 162 58.0
FAN14G0521 Fragaria x ananassa HOM05D000424 ORTHO05D000355 5.0e-18 95.5 162 58.0
FAN14G2229 Fragaria x ananassa HOM05D000424 ORTHO05D000355 5.0e-18 95.5 162 58.0
MSTRG.2751 Avicennia marina HOM05D000424 ORTHO05D000355 6.6e-18 95.1 161 47.2
RcHm_v2.0_Chr3g0497531 Rosa chinensis HOM05D000424 ORTHO05D000355 8.6e-18 94.7 158 58.9
Phvul.001G096800 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.9e-17 93.6 157 60.5
Potri.013G053600 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.9e-17 93.6 164 60.4
Gohir.A13G163200 Gossypium hirsutum HOM05D000424 ORTHO05D000355 2.5e-17 93.2 164 57.3
MBI13_g43948_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D019275 2.5e-17 93.2 134 66.4
Cc00_g23980 Coffea canephora HOM05D000424 ORTHO05D000355 5.6e-17 92.0 162 58.6
TWI32G1162 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 7.3e-17 91.7 158 58.2
BraA02t05256Z Brassica rapa HOM05D000424 ORTHO05D000355 1.6e-16 90.5 65 61.5
FAN09G0978 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.6e-16 90.5 57 68.4
TAR629G2813 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.1e-16 90.1 159 58.5
MELO3C005984.2 Cucumis melo HOM05D000424 ORTHO05D000355 2.8e-16 89.7 51 82.4
Manes.09G144200 Manihot esculenta HOM05D000424 ORTHO05D000355 3.6e-16 89.4 126 69.0
Duzib177G0598 Durio zibethinus HOM05D000424 ORTHO05D000355 4.7e-16 89.0 159 56.0
SGA_v2.0_scaffold33G13397 Striga asiatica HOM05D000424 ORTHO05D000355 8.0e-16 88.2 159 34.6
ECA233G4382 Erigeron canadensis HOM05D000424 ORTHO05D000355 1.1e-15 87.8 135 36.3
FvH4_1g14610 Fragaria vesca HOM05D000424 ORTHO05D000355 1.1e-15 87.8 158 57.0
FAN19G3067 Fragaria x ananassa HOM05D007168 ORTHO05D000355 1.1e-15 87.8 158 57.0
A02p02830 Brassica napus HOM05D000424 ORTHO05D000355 3.1e-15 86.3 64 59.4
SalBow5G0171 Salvia bowleyana HOM05D000424 ORTHO05D000355 3.1e-15 86.3 152 57.9
SalBow5G2401 Salvia bowleyana HOM05D000424 ORTHO05D000355 3.1e-15 86.3 152 57.9
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 4.0e-15 85.9 143 33.6
EL10Ac9g22958 Beta vulgaris HOM05D000424 ORTHO05D000355 4.0e-15 85.9 161 47.2
Sc09g0004080 Simmondsia chinensis HOM05D000424 ORTHO05D000355 4.0e-15 85.9 158 57.6
Gohir.D13G170200 Gossypium hirsutum HOM05D000424 ORTHO05D000355 8.9e-15 84.7 158 57.0
Gorai.013G191700 Gossypium raimondii HOM05D000424 ORTHO05D000355 8.9e-15 84.7 158 57.0
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 3.4e-14 82.8 117 68.4
Nn7g35778 Nelumbo nucifera HOM05D000424 ORTHO05D000355 3.4e-14 82.8 156 59.6
Haze_19394 Corylus avellana HOM05D000424 ORTHO05D000355 1.3e-13 80.9 136 64.0
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 1.3e-13 80.9 65 58.5
CDE09G0868 Ceratophyllum demersum HOM05D000558 ORTHO05D001857 1.7e-13 80.5 159 56.0
Glyma.19G108600 Glycine max HOM05D000424 ORTHO05D000355 2.2e-13 80.1 154 42.9
Manes.12G070401 Manihot esculenta HOM05D000424 ORTHO05D000355 2.2e-13 80.1 126 65.9
Psat3g090880 Pisum sativum HOM05D000424 ORTHO05D000355 2.9e-13 79.7 154 55.2
COL.COLO4_20562 Corchorus olitorius HOM05D000424 ORTHO05D000355 8.3e-13 78.2 144 58.3
Sopen05g013400 Solanum pennellii HOM05D000424 ORTHO05D000355 8.3e-13 78.2 52 69.2
SHI14729 Sapria himalayana HOM05D000424 ORTHO05D000355 3.2e-12 76.3 162 32.7
Aqoxy7G00502 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 5.4e-12 75.5 159 56.6
MBI13_g05941_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D000355 5.4e-12 75.5 156 57.7
Os01g0816000 Oryza sativa ssp. japonica HOM05D007168 ORTHO05D000355 5.4e-12 75.5 122 32.8
Zm00001eb369070 Zea mays HOM05D007168 ORTHO05D000355 5.4e-12 75.5 133 30.8
Lsat_1_v5_gn_6_38241 Lactuca sativa HOM05D000424 ORTHO05D000355 9.2e-12 74.7 108 37.0
Lalb_Chr14g0364331 Lupinus albus HOM05D000424 ORTHO05D000355 9.2e-12 74.7 160 30.0
Prupe.7G001100 Prunus persica HOM05D000424 ORTHO05D000355 1.2e-11 74.3 148 59.5
THA.LOC104821165 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 1.2e-11 74.3 158 53.2
EL10Ac9g22959 Beta vulgaris HOM05D000424 ORTHO05D000355 3.5e-11 72.8 114 48.2
FAN28G1277 Fragaria x ananassa HOM05D007168 ORTHO05D000355 6.0e-11 72.0 107 67.3
HanXRQChr02g0054251 Helianthus annuus HOM05D000424 ORTHO05D000355 7.8e-11 71.6 111 63.1
HanXRQChr16g0500321 Helianthus annuus HOM05D000424 ORTHO05D000355 1.7e-10 70.5 111 34.2
HPP92_026675 Vanilla planifolia HOM05D000424 ORTHO05D000355 5.0e-10 68.9 106 51.9
FAN23G1015 Fragaria x ananassa HOM05D007168 ORTHO05D000355 1.5e-09 67.4 44 63.6
FAN23G3116 Fragaria x ananassa HOM05D007168 ORTHO05D000355 1.5e-09 67.4 44 63.6
Lj1g0010087 Lotus japonicus HOM05D000424 ORTHO05D000355 4.3e-09 65.9 143 41.3
HPP92_018012 Vanilla planifolia HOM05D000424 ORTHO05D000355 7.3e-09 65.1 106 68.9
SEGI_12422 Sequoiadendron giganteum HOM05D000424 ORTHO05D009113 8.1e-08 61.6 115 28.7
Cfa021587 Carpinus fangiana HOM05D000424 ORTHO05D000355 5.2e-07 58.9 90 74.4
HanXRQChr16g0499391 Helianthus annuus HOM05D007168 ORTHO05D009495 6.8e-07 58.5 60 48.3
QL07p020796 Quercus lobata HOM05D000424 ORTHO05D000355 1.2e-06 57.8 67 44.8
Nitab4.5_0000349g0290 Nicotiana tabacum HOM05D000424 ORTHO05D000355 2.0e-06 57.0 59 49.2
ClCG09G003150 Citrullus lanatus HOM05D000991 ORTHO05D009113 9.9e-06 54.7 56 44.6
CsaV3_7G032070 Cucumis sativus L. HOM05D007335 ORTHO05D009113 9.9e-06 54.7 56 44.6
Potri.005G147200 Populus trichocarpa HOM05D007335 ORTHO05D009113 9.9e-06 54.7 63 41.3


User provided reference genes

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