Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 4.5e-194 681.0 329 100.0
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 3.1e-163 578.6 329 85.4
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 1.6e-162 576.2 328 85.7
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 3.4e-149 531.9 329 79.0
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 4.1e-115 418.7 328 62.8
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 7.1e-115 417.9 346 60.7
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 7.8e-114 414.5 327 63.0
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 7.8e-114 414.5 327 63.0
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 1.3e-113 413.7 327 62.7
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 3.0e-113 412.5 328 61.9
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 3.0e-113 412.5 328 61.9
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 3.0e-113 412.5 327 62.7
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 8.7e-113 411.0 327 62.7
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 1.1e-112 410.6 329 62.0
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 5.2e-110 401.7 329 61.1
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 5.2e-110 401.7 328 62.5
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 5.2e-110 401.7 328 58.8
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 1.2e-109 400.6 328 59.1
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 1.2e-109 400.6 327 58.7
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 1.5e-109 400.2 326 59.8
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 5.8e-109 398.3 327 60.9
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 9.9e-109 397.5 327 60.9
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 1.3e-108 397.1 330 60.3
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 4.9e-108 395.2 334 59.9
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 1.2e-106 390.6 333 58.3
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 1.3e-105 387.1 329 59.0
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 3.0e-105 386.0 327 59.6
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 6.6e-105 384.8 328 58.5
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 1.1e-104 384.0 328 58.8
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 1.5e-104 383.6 328 58.8
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 5.6e-104 381.7 328 58.5
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 7.3e-104 381.3 329 59.3
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 7.3e-104 381.3 329 57.8
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 1.6e-103 380.2 327 58.1
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 1.6e-103 380.2 328 57.3
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 6.2e-103 378.3 327 57.8
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.1e-102 377.5 335 58.5
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 1.1e-102 377.5 330 56.7
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.8e-102 376.7 335 57.6
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 1.2e-101 374.0 326 56.4
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 2.0e-101 373.2 327 55.7
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 2.6e-101 372.9 334 55.7
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 7.6e-101 371.3 342 54.1
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 1.3e-100 370.5 327 56.6
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 2.9e-100 369.4 328 56.1
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 4.9e-100 368.6 335 56.4
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 6.4e-100 368.2 333 55.6
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 1.4e-99 367.1 328 55.2
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 1.4e-99 367.1 333 55.3
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 1.9e-99 366.7 318 58.2
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 2.4e-99 366.3 329 55.0
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 2.4e-99 366.3 333 55.0
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 6.0e-98 361.7 302 59.9
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 3.9e-97 359.0 333 53.8
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 5.1e-97 358.6 328 57.0
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 1.5e-96 357.1 328 54.3
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 1.9e-96 356.7 331 55.6
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 4.3e-96 355.5 334 53.3
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 4.3e-96 355.5 327 53.5
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 5.6e-96 355.1 329 55.0
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 2.1e-95 353.2 344 51.7
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 2.8e-95 352.8 302 59.9
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 4.8e-95 352.1 328 53.4
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 1.1e-94 350.9 330 53.3
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 1.8e-94 350.1 328 54.9
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 3.1e-94 349.4 328 52.7
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 1.2e-93 347.4 331 52.6
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 5.8e-93 345.1 336 52.4
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 7.6e-93 344.7 330 53.0
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 1.3e-92 344.0 330 53.9
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 3.2e-91 339.3 330 52.1
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 3.2e-91 339.3 294 56.8
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 1.3e-89 334.0 329 51.7
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 5.1e-89 332.0 328 51.8
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 6.7e-89 331.6 329 53.2
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 3.3e-88 329.3 267 61.0
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 3.3e-88 329.3 335 51.6
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 4.3e-88 328.9 327 53.8
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 4.3e-88 328.9 328 52.1
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 2.8e-87 326.2 330 52.7
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 2.8e-87 326.2 330 52.7
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 1.1e-86 324.3 290 55.9
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 1.1e-86 324.3 368 48.4
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 1.8e-86 323.6 329 52.3
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 4.0e-86 322.4 328 49.4
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 6.9e-86 321.6 293 54.3
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 6.9e-86 321.6 328 51.5
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 9.0e-86 321.2 329 50.5
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 1.5e-85 320.5 336 51.8
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 7.1e-83 311.6 330 50.3
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 2.5e-80 303.1 335 51.9
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 3.3e-80 302.8 334 47.3
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 4.3e-80 302.4 338 48.5
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 6.3e-79 298.5 332 47.0
Hund17095 Selenicereus undatus HOM05D002637 ORTHO05D008095 2.5e-72 276.6 265 53.2
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 1.3e-71 274.2 332 47.0
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 2.8e-71 273.1 334 44.3
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 2.8e-71 273.1 351 43.0
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 3.4e-69 266.2 262 52.7
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 1.3e-68 264.2 358 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 1.2e-66 257.7 332 42.8
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 9.7e-64 248.1 383 38.4
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 1.5e-61 240.7 382 36.9
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 1.6e-58 230.7 207 58.9
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 2.0e-53 213.8 178 60.7
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 2.7e-45 186.8 134 66.4
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 1.6e-42 177.6 133 65.4
Hma1.2p1_2406F.1_g321490 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 1.8e-41 174.1 170 53.5
CBR_g61261 Chara braunii HOM05D002637 ORTHO05D008095 1.7e-36 157.5 322 32.6
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 3.3e-35 153.3 124 59.7
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 8.9e-33 145.2 113 58.4
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 2.0e-32 144.1 134 53.0
SEGI_14087 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 1.4e-30 137.9 195 39.5
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 6.6e-28 129.0 99 63.6
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 1.6e-26 124.4 87 67.8
TPR.G7688 Trifolium pratense HOM05D002637 ORTHO05D008095 7.5e-24 115.5 116 49.1
Medtr7g006510 Medicago truncatula HOM05D002637 ORTHO05D008095 7.8e-21 105.5 93 50.5
Atru.chr5.3330 Acer truncatum HOM05D002637 ORTHO05D008095 3.9e-20 103.2 142 45.1
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 9.8e-16 88.6 59 69.5
Cre03.g181600 Chlamydomonas reinhardtii HOM05D002637 ORTHO05D008095 2.2e-15 87.4 319 24.1
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 1.4e-14 84.7 69 56.5
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 6.6e-12 75.9 115 40.9
TAR629G2985 Trochodendron aralioides HOM05D002637 ORTHO05D008095 2.3e-09 67.4 50 58.0
Atru.chr5.3333 Acer truncatum HOM05D000263 ORTHO05D000213 3.4e-08 63.5 96 36.5
Atru.chr5.3338 Acer truncatum HOM05D002637 ORTHO05D008095 7.1e-06 55.8 47 55.3


User provided reference genes

Program Settings