Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 2.1e-86 322.4 167 100.0
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 2.5e-84 315.5 167 97.6
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 2.1e-83 312.4 167 96.4
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.9e-79 299.3 167 91.6
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 5.4e-71 271.2 167 80.8
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 9.3e-71 270.4 167 79.0
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.2e-70 270.0 167 79.0
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 2.7e-70 268.9 166 77.7
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.7e-70 268.9 167 78.4
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 4.6e-70 268.1 165 80.0
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 7.8e-70 267.3 165 80.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 1.0e-69 266.9 166 77.7
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.3e-69 266.5 168 76.8
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 2.3e-69 265.8 165 79.4
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.0e-69 265.4 166 76.5
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 5.1e-69 264.6 167 79.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 6.6e-69 264.2 167 77.8
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 8.7e-69 263.8 167 78.4
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.1e-68 263.5 165 77.6
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.5e-68 263.1 165 77.6
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.9e-68 262.7 165 77.6
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 2.5e-68 262.3 167 77.2
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 3.3e-68 261.9 167 76.0
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.6e-67 259.6 167 74.9
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.6e-67 259.6 167 74.9
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.6e-67 259.6 167 74.9
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.6e-67 259.6 167 74.9
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 2.1e-67 259.2 167 76.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 2.8e-67 258.8 163 77.3
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.2e-67 257.7 167 74.3
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 8.1e-67 257.3 162 77.8
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 3.1e-66 255.4 167 74.3
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 5.3e-66 254.6 164 76.2
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 9.0e-66 253.8 166 74.1
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.5e-65 253.1 169 74.6
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.0e-65 252.7 166 75.9
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 2.6e-65 252.3 167 75.4
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 3.4e-65 251.9 167 74.9
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 4.5e-65 251.5 167 76.0
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 5.8e-65 251.1 167 73.7
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 71.9
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 7.6e-65 250.8 166 74.1
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 7.6e-65 250.8 169 74.0
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 9.9e-65 250.4 170 72.9
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.3e-64 250.0 167 75.4
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.3e-64 250.0 169 73.4
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.7e-64 249.6 163 75.5
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 2.2e-64 249.2 166 74.7
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 73.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 73.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 73.7
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 3.8e-64 248.4 166 73.5
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 4.9e-64 248.1 166 74.7
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 4.9e-64 248.1 189 66.7
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 6.4e-64 247.7 166 72.9
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 6.4e-64 247.7 166 74.1
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 6.4e-64 247.7 167 71.3
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.2e-63 245.4 166 73.5
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 3.2e-63 245.4 166 74.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.2e-63 245.4 193 65.8
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 4.2e-63 245.0 167 71.3
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 4.2e-63 245.0 166 72.3
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 5.4e-63 244.6 167 71.3
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 5.4e-63 244.6 167 74.3
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 7.1e-63 244.2 166 72.3
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 9.3e-63 243.8 166 72.9
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.6e-62 243.0 167 70.1
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 2.1e-62 242.7 167 72.5
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 3.5e-62 241.9 153 76.5
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 7.9e-62 240.7 164 71.3
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 7.9e-62 240.7 163 74.2
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.0e-61 240.4 166 70.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.3e-61 239.2 154 76.6
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.3e-61 239.2 191 63.4
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 2.3e-61 239.2 204 62.7
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 4.3e-60 235.0 149 77.2
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 5.6e-60 234.6 168 69.6
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.8e-58 229.6 138 79.7
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 2.4e-58 229.2 159 69.8
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.9e-56 221.5 167 62.9
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 2.4e-55 219.2 140 75.0
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 3.2e-55 218.8 166 60.8
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.1e-54 216.1 164 66.5
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.5e-54 215.3 190 58.9
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 3.9e-53 211.8 137 70.1
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.1e-52 210.3 158 63.9
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.5e-52 209.9 158 63.9
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.3e-52 208.8 160 61.9
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.3e-52 208.8 163 63.8
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.4e-50 203.4 134 72.4
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.4e-50 203.4 117 82.1
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 1.8e-50 203.0 139 69.1
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.4e-50 202.6 150 61.3
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.1e-50 202.2 158 60.8
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 3.1e-50 202.2 150 61.3
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 3.1e-50 202.2 136 69.1
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.1e-50 202.2 174 60.9
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 4.0e-50 201.8 150 60.7
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 4.0e-50 201.8 150 60.7
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 6.9e-50 201.1 127 76.4
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.2e-49 200.3 152 60.5
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.0e-48 197.2 150 59.3
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.0e-48 197.2 150 60.0
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.9e-48 195.7 137 65.7
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 2.5e-47 192.6 122 75.4
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.2e-47 192.2 162 57.4
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.2e-47 191.8 162 57.4
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 9.3e-47 190.7 116 79.3
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 9.3e-47 190.7 118 75.4
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.3e-47 190.7 162 57.4
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.6e-46 189.9 162 55.6
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.6e-46 189.9 127 68.5
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 2.1e-46 189.5 154 58.4
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 1.3e-45 186.8 137 60.6
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 5.1e-45 184.9 120 72.5
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 8.7e-45 184.1 121 75.2
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.1e-44 183.7 160 53.1
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 1.3e-43 180.3 117 74.4
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.3e-40 170.2 138 63.0
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 7.9e-38 161.0 89 84.3
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.4e-36 154.5 154 54.5
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.3e-35 151.4 138 56.5
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.4e-34 149.4 118 61.9
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 2.0e-33 146.4 167 47.9
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 8.5e-32 141.0 123 56.9
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 1.9e-31 139.8 163 48.5
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 5.5e-31 138.3 134 56.7
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 5.5e-31 138.3 167 44.3
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 3.6e-30 135.6 92 66.3
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 7.9e-30 134.4 128 58.6
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 4.4e-28 128.6 113 53.1
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 7.4e-28 127.9 76 78.9
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 4.8e-27 125.2 146 47.3
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 2.0e-25 119.8 90 67.8
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.0e-25 119.8 167 46.1
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.0e-24 117.5 73 78.1
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 9.4e-23 110.9 103 52.4
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.0e-21 107.5 71 66.2
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 3.3e-20 102.4 57 73.7
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-19 99.8 94 54.3
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.7e-19 99.0 149 38.9
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 4.8e-19 98.6 96 50.0
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 4.8e-19 98.6 96 50.0
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 4.8e-19 98.6 96 50.0
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 3.8e-16 89.0 75 65.3
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.1e-15 87.4 75 57.3
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 1.9e-15 86.7 167 37.7
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.7e-14 82.8 59 66.1
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 3.3e-12 75.9 58 55.2
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 4.4e-12 75.5 54 72.2
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 5.7e-12 75.1 52 71.2
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 1.3e-11 73.9 50 70.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.7e-11 73.6 49 69.4
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.2e-08 63.2 48 68.8
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.5e-07 58.5 39 76.9
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 2.1e-06 56.6 34 73.5


User provided reference genes

Program Settings