Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 3.4e-280 967.6 470 100.0
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 4.7e-229 797.7 501 81.2
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 1.9e-209 732.6 696 59.2
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 7.9e-168 594.3 514 59.1
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 5.1e-167 591.7 474 64.8
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 8.7e-167 590.9 479 64.7
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 1.1e-166 590.5 514 61.1
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 1.6e-165 586.6 487 62.8
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 2.1e-165 586.3 514 60.5
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 1.4e-164 583.6 480 61.9
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 1.8e-164 583.2 491 61.1
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 2.4e-164 582.8 516 59.9
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 8.4e-162 574.3 518 59.8
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 4.2e-161 572.0 537 55.7
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 1.2e-160 570.5 442 64.0
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 2.7e-160 569.3 505 59.0
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.0e-159 567.4 478 63.2
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 3.0e-159 565.8 477 63.3
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 3.0e-159 565.8 497 59.0
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 5.1e-159 565.1 488 63.1
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 4.3e-158 562.0 433 64.0
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 2.8e-157 559.3 481 61.1
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 2.4e-156 556.2 485 60.0
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 4.1e-156 555.4 506 58.9
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 5.3e-156 555.1 465 60.0
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 6.9e-156 554.7 482 59.3
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.2e-155 553.9 488 59.8
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.2e-155 553.9 488 59.8
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 7.7e-155 551.2 457 61.7
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 1.7e-154 550.1 463 62.9
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 2.9e-154 549.3 481 59.5
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.8e-154 548.9 488 59.6
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 1.1e-153 547.4 456 61.8
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 1.4e-153 547.0 488 59.4
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.2e-153 545.4 488 59.4
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 4.2e-153 545.4 430 63.7
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 5.5e-153 545.0 448 62.3
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 5.5e-153 545.0 494 59.1
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 1.2e-152 543.9 483 59.8
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 4.6e-152 542.0 500 57.8
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 1.0e-151 540.8 464 60.8
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 1.8e-151 540.0 503 58.1
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 1.8e-151 540.0 512 57.0
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 1.8e-151 540.0 433 62.8
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 3.0e-151 539.3 497 57.9
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 5.1e-151 538.5 422 64.2
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 1.1e-150 537.3 481 60.9
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 2.5e-150 536.2 451 60.1
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 7.4e-150 534.6 487 58.1
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 2.2e-149 533.1 447 61.1
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 8.2e-149 531.2 509 56.4
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 8.2e-149 531.2 448 60.3
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 1.8e-148 530.0 444 61.0
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 1.8e-148 530.0 412 62.9
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 4.1e-148 528.9 380 67.9
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.9e-148 528.1 536 53.7
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 6.9e-148 528.1 463 58.3
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 1.5e-147 526.9 499 56.7
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 5.9e-147 525.0 464 60.1
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 1.7e-146 523.5 521 55.3
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 3.8e-146 522.3 476 59.0
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 2.1e-144 516.5 449 59.2
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 2.7e-144 516.2 498 56.8
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 1.0e-143 514.2 440 60.9
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 1.0e-143 514.2 455 61.1
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 2.3e-143 513.1 455 60.0
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 5.1e-143 511.9 478 57.3
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 2.0e-142 510.0 522 56.1
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 9.7e-142 507.7 398 65.6
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.3e-141 507.3 490 56.5
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 1.7e-141 506.9 445 59.6
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 1.7e-141 506.9 441 60.1
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 2.2e-141 506.5 478 56.9
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 2.8e-141 506.1 451 59.0
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.4e-140 503.8 444 58.8
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 1.8e-140 503.4 494 56.1
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 7.0e-140 501.5 519 55.5
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 9.1e-140 501.1 450 59.3
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 4.5e-139 498.8 440 58.6
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 4.5e-139 498.8 440 58.6
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 7.7e-139 498.0 448 59.4
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 1.0e-138 497.7 461 57.3
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.9e-138 496.1 511 54.2
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 4.2e-137 492.3 510 53.1
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 1.2e-136 490.7 498 53.0
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 4.4e-134 482.3 449 57.9
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 1.8e-132 476.9 430 57.2
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 4.1e-132 475.7 363 64.5
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 1.0e-130 471.1 362 66.0
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 2.9e-130 469.5 453 54.5
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 1.2e-128 464.2 438 55.5
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 1.6e-128 463.8 446 53.8
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 1.4e-124 450.7 391 60.4
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 7.0e-124 448.4 413 56.7
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 9.1e-124 448.0 469 52.9
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 1.5e-94 350.9 256 66.0
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 5.4e-92 342.4 334 54.8
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 1.2e-88 331.3 192 78.6
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 8.9e-79 298.5 183 76.0
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 4.9e-77 292.7 238 63.0
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 4.6e-67 259.6 163 73.0
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 1.4e-63 248.1 254 55.1
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 1.4e-60 238.0 479 33.6
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 3.2e-60 236.9 208 58.7
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 7.1e-60 235.7 191 55.0
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 4.6e-59 233.0 224 56.7
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 6.2e-56 222.6 247 54.3
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 1.0e-53 215.3 247 50.6
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 8.2e-48 195.7 651 27.6
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 4.0e-47 193.4 558 27.6
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 5.9e-38 162.9 446 28.5
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 7.7e-38 162.5 138 61.6
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 3.7e-32 143.7 187 47.1
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.4e-23 115.2 98 58.2
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 7.0e-23 112.8 362 27.3
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 1.0e-18 99.0 100 52.0
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 2.6e-17 94.4 58 70.7
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 7.4e-17 92.8 48 83.3
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 3.8e-13 80.5 154 30.5
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 1.9e-12 78.2 86 52.3
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 9.4e-12 75.9 77 51.9
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 1.0e-10 72.4 186 30.1
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 5.2e-10 70.1 68 54.4
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 1.5e-09 68.6 47 59.6
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 3.4e-09 67.4 41 73.2
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 4.4e-09 67.0 118 33.1


User provided reference genes

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