Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G012770 Citrullus lanatus HOM05D003579 ORTHO05D004266 3.8e-48 194.5 99 100.0
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 3.8e-40 167.9 90 96.7
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 3.8e-40 167.9 90 96.7
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 1.2e-38 162.9 89 94.4
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 1.4e-37 159.5 90 88.9
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 1.4e-37 159.5 90 88.9
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 1.4e-37 159.5 90 88.9
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 5.2e-37 157.5 90 87.8
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 8.8e-37 156.8 90 87.8
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 1.2e-36 156.4 90 87.8
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 1.5e-36 156.0 90 87.8
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 2.0e-36 155.6 89 87.6
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.6e-36 155.2 90 86.7
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 2.6e-36 155.2 90 88.9
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 3.4e-36 154.8 90 86.7
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 4.4e-36 154.5 89 86.5
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 5.7e-36 154.1 90 86.7
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 5.7e-36 154.1 89 87.6
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 5.7e-36 154.1 90 86.7
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 7.5e-36 153.7 86 89.5
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 1.3e-35 152.9 89 87.6
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 1.3e-35 152.9 89 87.6
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 1.7e-35 152.5 89 85.4
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 1.7e-35 152.5 85 90.6
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 1.7e-35 152.5 90 86.7
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.2e-35 152.1 88 87.5
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 2.2e-35 152.1 88 87.5
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 2.2e-35 152.1 90 84.4
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 2.2e-35 152.1 89 85.4
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 2.8e-35 151.8 89 87.6
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 2.8e-35 151.8 89 87.6
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 2.8e-35 151.8 89 85.4
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 2.8e-35 151.8 89 86.5
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 3.7e-35 151.4 89 85.4
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 4.9e-35 151.0 89 86.5
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.9e-35 151.0 90 85.6
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.9e-35 151.0 90 85.6
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 4.9e-35 151.0 89 86.5
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 8.3e-35 150.2 89 84.3
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 8.3e-35 150.2 89 87.6
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 8.3e-35 150.2 89 85.4
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 8.3e-35 150.2 90 82.2
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 8.3e-35 150.2 89 86.5
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 8.3e-35 150.2 89 83.1
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.1e-34 149.8 90 82.2
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 1.1e-34 149.8 89 84.3
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.1e-34 149.8 90 84.4
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 1.1e-34 149.8 90 84.4
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 1.4e-34 149.4 89 84.3
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.4e-34 149.4 89 83.1
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 1.4e-34 149.4 90 84.4
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.4e-34 149.4 90 84.4
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.4e-34 149.4 90 84.4
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 1.8e-34 149.1 89 84.3
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.8e-34 149.1 88 86.4
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 1.8e-34 149.1 89 84.3
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 1.8e-34 149.1 89 83.1
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 2.4e-34 148.7 89 84.3
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 2.4e-34 148.7 90 81.1
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 2.4e-34 148.7 90 83.3
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 2.4e-34 148.7 89 83.1
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 3.1e-34 148.3 90 81.1
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 3.1e-34 148.3 90 81.1
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 3.1e-34 148.3 90 81.1
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 3.1e-34 148.3 90 81.1
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 3.1e-34 148.3 90 81.1
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 3.1e-34 148.3 90 81.1
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 3.1e-34 148.3 89 82.0
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 4.1e-34 147.9 89 84.3
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 4.1e-34 147.9 89 87.6
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.1e-34 147.9 88 85.2
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 4.1e-34 147.9 89 84.3
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 4.1e-34 147.9 89 82.0
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 5.4e-34 147.5 89 82.0
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 5.4e-34 147.5 90 83.3
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 5.4e-34 147.5 89 82.0
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 5.4e-34 147.5 90 84.4
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 5.4e-34 147.5 90 82.2
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 7.0e-34 147.1 90 84.4
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 7.0e-34 147.1 90 84.4
BcaB04g17424 Brassica carinata HOM05D003579 ORTHO05D004266 9.2e-34 146.7 92 76.1
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 9.2e-34 146.7 89 80.9
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.2e-33 146.4 90 84.4
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 1.2e-33 146.4 89 82.0
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 1.2e-33 146.4 87 83.9
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.6e-33 146.0 89 82.0
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 1.6e-33 146.0 88 85.2
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 2.0e-33 145.6 90 82.2
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 2.0e-33 145.6 90 82.2
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.0e-33 145.6 90 81.1
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 2.0e-33 145.6 88 81.8
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 2.0e-33 145.6 89 82.0
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.7e-33 145.2 89 84.3
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 4.5e-33 144.4 89 82.0
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 5.9e-33 144.1 90 83.3
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 5.9e-33 144.1 90 83.3
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 5.9e-33 144.1 90 83.3
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 7.8e-33 143.7 90 82.2
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 1.0e-32 143.3 89 82.0
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 1.0e-32 143.3 89 80.9
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 1.3e-32 142.9 88 81.8
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.3e-32 142.9 90 82.2
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.3e-32 142.9 90 82.2
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 1.3e-32 142.9 90 83.3
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 1.3e-32 142.9 89 79.8
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 1.7e-32 142.5 90 82.2
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 2.3e-32 142.1 90 75.6
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 2.3e-32 142.1 89 79.8
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 2.9e-32 141.7 82 86.6
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 2.9e-32 141.7 89 77.5
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 2.9e-32 141.7 86 83.7
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 5.0e-32 141.0 89 79.8
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 1.1e-31 139.8 89 77.5
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 1.5e-31 139.4 90 76.7
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 1.9e-31 139.0 89 77.5
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 2.5e-31 138.7 91 76.9
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 4.3e-31 137.9 88 78.4
Lsat_1_v5_gn_1_111321 Lactuca sativa HOM05D003579 ORTHO05D004266 1.6e-30 136.0 91 73.6
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.6e-30 136.0 88 77.3
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.6e-30 134.8 87 75.9
Lsat_1_v5_gn_7_12281 Lactuca sativa HOM05D003579 ORTHO05D004266 2.3e-29 132.1 87 73.6
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 5.2e-29 131.0 89 75.3
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 2.0e-28 129.0 90 75.6
BolC5t33210H Brassica oleracea HOM05D003579 ORTHO05D004266 2.0e-28 129.0 90 75.6
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 3.4e-28 128.3 88 73.9
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 4.4e-28 127.9 89 70.8
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 7.5e-28 127.1 90 74.4
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 2.2e-27 125.6 89 69.7
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 8.3e-27 123.6 89 70.8
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 1.1e-26 123.2 90 70.0
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 1.8e-26 122.5 89 67.4
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 2.4e-26 122.1 89 66.3
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 4.0e-21 104.8 62 85.5
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 3.4e-20 101.7 62 85.5
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 7.5e-20 100.5 86 66.3
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 9.8e-20 100.1 62 83.9
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 1.7e-19 99.4 62 80.6
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 4.9e-19 97.8 59 86.4
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 1.1e-18 96.7 88 58.0
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 4.1e-18 94.7 62 77.4
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 1.5e-15 86.3 90 56.7
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 8.1e-14 80.5 90 48.9
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 5.8e-12 74.3 87 51.7
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 6.4e-11 70.9 87 46.0
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 1.5e-07 59.7 34 79.4


User provided reference genes

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