Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 3.5e-149 531.6 265 100.0
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 5.2e-76 288.5 169 85.8
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 2.3e-71 273.1 169 81.7
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 7.8e-64 248.1 169 74.6
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 1.3e-63 247.3 171 74.3
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 1.3e-63 247.3 169 74.0
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 2.3e-63 246.5 169 74.0
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 3.0e-63 246.1 169 71.6
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 3.9e-63 245.7 169 71.0
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 3.9e-63 245.7 169 73.4
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 6.6e-63 245.0 169 74.0
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 6.6e-63 245.0 193 65.8
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 8.6e-63 244.6 169 71.6
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.5e-62 243.8 196 65.8
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 1.5e-62 243.8 169 72.8
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 1.5e-62 243.8 220 60.0
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 1.9e-62 243.4 218 58.3
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.9e-62 243.4 169 72.2
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.5e-62 243.0 169 72.2
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.5e-62 243.0 169 72.8
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 3.3e-62 242.7 169 71.6
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 4.3e-62 242.3 169 72.8
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.3e-62 242.3 169 72.8
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.3e-62 242.3 169 72.8
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.3e-62 242.3 169 72.8
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 7.3e-62 241.5 169 72.8
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 1.2e-61 240.7 169 71.6
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 2.1e-61 240.0 181 73.5
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 2.8e-61 239.6 169 71.6
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 3.6e-61 239.2 169 71.6
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 4.7e-61 238.8 169 71.6
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 1.1e-60 237.7 169 71.0
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 1.4e-60 237.3 168 70.2
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 1.4e-60 237.3 168 70.2
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.4e-60 237.3 169 70.4
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 1.8e-60 236.9 169 71.6
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 1.2e-59 234.2 169 70.4
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 2.0e-59 233.4 169 68.6
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 2.0e-59 233.4 169 69.8
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 2.0e-59 233.4 160 73.1
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 4.4e-59 232.3 169 70.4
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 4.4e-59 232.3 169 69.2
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 4.4e-59 232.3 169 69.2
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 4.4e-59 232.3 218 58.3
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 5.8e-59 231.9 169 69.8
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 7.6e-59 231.5 169 68.6
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 9.9e-59 231.1 169 68.0
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 9.9e-59 231.1 169 69.8
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 9.9e-59 231.1 169 70.4
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 1.3e-58 230.7 169 69.2
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 1.3e-58 230.7 169 68.0
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 1.7e-58 230.3 169 69.8
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 1.7e-58 230.3 169 69.2
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 2.2e-58 229.9 169 68.6
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 2.9e-58 229.6 169 69.2
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 2.9e-58 229.6 169 70.4
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 2.9e-58 229.6 169 69.8
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 2.9e-58 229.6 169 66.9
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 3.8e-58 229.2 169 69.8
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 4.9e-58 228.8 169 68.6
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 4.9e-58 228.8 169 68.6
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 4.9e-58 228.8 169 68.6
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 6.4e-58 228.4 169 69.2
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 6.4e-58 228.4 169 69.8
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 6.4e-58 228.4 169 68.0
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 6.4e-58 228.4 169 68.0
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 8.4e-58 228.0 169 68.6
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 1.1e-57 227.6 169 68.6
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 1.4e-57 227.3 169 67.5
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 1.4e-57 227.3 169 67.5
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.9e-57 226.9 218 55.5
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.9e-57 226.9 169 69.2
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 3.2e-57 226.1 169 67.5
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 3.2e-57 226.1 169 66.9
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 3.2e-57 226.1 169 67.5
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 5.4e-57 225.3 169 68.0
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 9.2e-57 224.6 169 66.9
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 9.2e-57 224.6 169 68.0
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 9.2e-57 224.6 169 66.9
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 9.2e-57 224.6 169 67.5
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 9.2e-57 224.6 169 66.3
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 9.2e-57 224.6 169 66.3
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.2e-56 224.2 169 66.3
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.6e-56 223.8 218 56.4
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 2.1e-56 223.4 169 66.3
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 2.1e-56 223.4 169 66.3
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 2.1e-56 223.4 169 66.9
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 2.1e-56 223.4 169 68.6
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 2.7e-56 223.0 169 66.3
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 2.7e-56 223.0 169 66.9
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 3.5e-56 222.6 169 68.0
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 4.6e-56 222.2 170 67.6
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 7.8e-56 221.5 172 66.3
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.0e-55 221.1 170 67.1
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 1.0e-55 221.1 218 55.5
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 1.7e-55 220.3 169 66.3
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 3.0e-55 219.5 169 66.3
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 3.0e-55 219.5 169 65.1
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 5.1e-55 218.8 169 64.5
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 5.1e-55 218.8 169 66.3
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 1.1e-54 217.6 169 65.1
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 3.3e-54 216.1 169 65.7
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 9.6e-54 214.5 169 64.5
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 1.3e-53 214.2 169 65.1
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 4.8e-53 212.2 169 62.7
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 6.2e-53 211.8 176 61.9
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 6.2e-53 211.8 175 65.1
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 1.8e-52 210.3 169 64.5
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 5.3e-52 208.8 169 62.1
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 2.0e-51 206.8 169 63.9
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 4.4e-51 205.7 200 55.5
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 7.6e-51 204.9 156 66.7
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 9.9e-51 204.5 169 63.9
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 6.4e-50 201.8 158 64.6
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.9e-49 200.3 152 67.1
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 4.6e-48 195.7 169 58.6
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 1.7e-47 193.7 170 60.6
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 2.3e-47 193.4 170 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 5.6e-46 188.7 169 56.2
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 4.0e-44 182.6 168 54.2
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 2.6e-43 179.9 168 54.8
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 5.8e-43 178.7 169 52.1
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 1.3e-42 177.6 169 58.6
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 3.2e-41 172.9 133 65.4
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 2.1e-37 160.2 117 65.8
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 1.5e-35 154.1 108 73.1
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 3.2e-33 146.4 166 49.4
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 2.7e-32 143.3 110 62.7
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 2.5e-30 136.7 106 64.2
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 1.6e-29 134.0 102 60.8
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 6.2e-29 132.1 98 69.4
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 4.0e-28 129.4 140 51.4
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 5.3e-28 129.0 224 37.5
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 1.7e-26 124.0 98 63.3
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 3.9e-23 112.8 135 50.4
SGA_v2.0_scaffold67G22627 Striga asiatica HOM05D003579 ORTHO05D004266 7.4e-22 108.6 109 54.1
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 6.3e-21 105.5 100 54.0
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 6.9e-20 102.1 221 35.7
Oeu016194.1 Olea europaea HOM05D002938 ORTHO05D002074 4.5e-19 99.4 157 42.0
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 8.5e-18 95.1 57 71.9
Gohir.D07G065501 Gossypium hirsutum HOM05D003579 ORTHO05D004266 3.2e-17 93.2 65 63.1
Hund22317 Selenicereus undatus HOM05D003579 ORTHO05D004266 7.2e-17 92.0 57 71.9
Lj1g0020491 Lotus japonicus HOM05D003579 ORTHO05D004266 3.6e-16 89.7 182 32.4
SEGI_32565 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 1.0e-15 88.2 57 68.4
Lsat_1_v5_gn_4_76120 Lactuca sativa HOM05D002699 ORTHO05D002931 1.8e-15 87.4 83 59.0
Lsat_1_v5_gn_5_188701 Lactuca sativa HOM05D003579 ORTHO05D025634 3.9e-15 86.3 87 56.3
Lsat_1_v5_gn_6_16260 Lactuca sativa HOM05D003579 ORTHO05D025634 8.8e-15 85.1 87 55.2
Lj3g0016828 Lotus japonicus HOM05D003579 ORTHO05D004266 1.1e-14 84.7 153 35.3
Lsat_1_v5_gn_6_17001 Lactuca sativa HOM05D003579 ORTHO05D025634 2.5e-14 83.6 87 56.3
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 3.3e-14 83.2 191 34.0
arahy.Tifrunner.gnm1.ann1.IG3GCS Arachis hypogaea HOM05D000921 ORTHO05D002852 4.3e-14 82.8 64 59.4
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 2.2e-13 80.5 172 34.3
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 1.1e-12 78.2 60 68.3
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 2.2e-10 70.5 44 77.3
Lsat_1_v5_gn_2_16661 Lactuca sativa HOM05D000929 ORTHO05D003255 2.9e-10 70.1 66 53.0
Lsat_1_v5_gn_2_30601 Lactuca sativa HOM05D000929 ORTHO05D003255 1.4e-09 67.8 66 53.0
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 1.4e-09 67.8 42 78.6
Lsat_1_v5_gn_6_63160 Lactuca sativa HOM05D002699 ORTHO05D002931 1.2e-08 64.7 77 48.1
Glyma.18G156700 Glycine max HOM05D003579 ORTHO05D025634 1.6e-08 64.3 37 83.8
Lsat_1_v5_gn_3_63580 Lactuca sativa HOM05D003579 ORTHO05D004266 1.6e-08 64.3 37 73.0
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 1.4e-07 61.2 102 37.3
Lalb_Chr14g0370491 Lupinus albus HOM05D003579 ORTHO05D004266 2.6e-06 57.0 50 58.0


User provided reference genes

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