Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 8.9e-108 393.7 204 100.0
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 2.3e-71 272.7 205 75.1
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.2e-67 260.4 303 55.1
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 5.5e-57 224.9 231 58.9
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 9.3e-57 224.2 202 64.9
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 3.9e-55 218.8 214 60.3
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 8.7e-55 217.6 205 62.4
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 1.5e-54 216.9 216 58.8
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.5e-54 216.1 214 60.3
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 7.4e-54 214.5 220 60.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.3e-53 213.8 210 61.9
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.6e-53 213.4 218 59.2
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 6.2e-53 211.5 212 57.5
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.4e-52 210.3 216 58.8
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.4e-52 210.3 216 57.4
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 3.1e-52 209.1 209 59.3
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 3.1e-52 209.1 223 57.8
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 9.0e-52 207.6 217 57.6
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.2e-51 207.2 271 48.7
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 1.2e-51 207.2 239 55.2
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 7.6e-51 204.5 207 57.5
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 2.9e-50 202.6 207 57.5
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 6.5e-50 201.4 216 56.9
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.1e-49 200.7 222 58.6
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.1e-49 200.7 267 48.7
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 1.9e-49 199.9 224 55.8
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 3.2e-49 199.1 230 56.1
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.6e-48 196.8 217 56.7
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 3.5e-48 195.7 232 53.0
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 6.0e-48 194.9 215 55.3
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 7.9e-48 194.5 215 55.3
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 1.3e-47 193.7 251 51.4
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 1.8e-47 193.4 217 55.3
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 2.3e-47 193.0 231 54.1
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 3.0e-47 192.6 229 55.0
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.9e-46 189.9 258 50.8
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 3.3e-46 189.1 206 56.8
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.3e-45 187.2 222 53.6
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 1.6e-45 186.8 275 49.1
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 2.8e-45 186.0 215 55.3
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 3.7e-45 185.7 232 52.6
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 4.8e-45 185.3 229 53.7
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 6.3e-45 184.9 212 55.2
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.1e-44 184.1 230 52.6
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 1.4e-44 183.7 221 52.0
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.8e-44 183.3 232 50.9
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 3.1e-44 182.6 221 54.3
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 5.3e-44 181.8 223 54.3
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.0e-42 177.6 229 52.8
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 6.5e-42 174.9 220 50.5
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 7.2e-41 171.4 245 49.4
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.1e-40 169.9 214 51.9
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.7e-40 169.5 212 51.9
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 2.7e-40 169.5 239 49.8
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 4.6e-40 168.7 229 50.7
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 6.1e-40 168.3 219 49.8
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.0e-39 167.5 268 45.1
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.8e-39 166.8 249 46.2
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 3.9e-39 165.6 227 48.0
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 5.1e-39 165.2 232 49.6
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.1e-39 165.2 214 50.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 6.7e-39 164.9 215 49.8
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 7.4e-38 161.4 151 64.9
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 9.7e-38 161.0 204 52.5
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 4.1e-36 155.6 216 44.9
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 6.9e-36 154.8 221 49.3
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 2.6e-35 152.9 212 50.9
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 5.9e-35 151.8 227 46.7
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 1.0e-34 151.0 143 61.5
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.3e-34 150.6 208 48.6
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.2e-34 149.8 208 47.1
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 4.2e-33 145.6 142 62.7
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 5.5e-33 145.2 105 72.4
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.5e-33 145.2 212 48.1
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 2.7e-32 142.9 207 44.9
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 6.1e-32 141.7 231 43.7
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.0e-31 139.4 143 61.5
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 2.6e-30 136.3 287 39.4
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 7.4e-30 134.8 151 55.6
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 9.7e-30 134.4 149 53.7
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 2.2e-29 133.3 158 53.8
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 4.8e-29 132.1 74 90.5
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 1.4e-28 130.6 159 53.5
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 1.8e-28 130.2 137 58.4
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.8e-28 130.2 174 49.4
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 2.4e-28 129.8 228 43.0
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 9.1e-28 127.9 143 59.4
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.5e-27 127.1 139 57.6
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 3.4e-27 125.9 189 46.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 7.7e-27 124.8 113 61.1
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.0e-26 124.4 105 66.7
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 5.0e-26 122.1 106 63.2
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 8.5e-26 121.3 105 62.9
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 8.5e-26 121.3 208 44.2
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.1e-25 120.9 106 62.3
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 1.4e-25 120.6 138 59.4
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 2.5e-25 119.8 105 62.9
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.2e-25 119.0 107 61.7
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 4.2e-25 119.0 105 63.8
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.2e-24 117.5 105 63.8
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 3.6e-24 115.9 104 62.5
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 3.6e-24 115.9 182 44.5
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 4.7e-24 115.5 105 62.9
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 2.3e-23 113.2 106 61.3
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 6.3e-21 105.1 107 57.9
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 8.2e-21 104.8 144 47.9
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.1e-20 104.4 105 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 5.3e-20 102.1 207 39.6
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 1.6e-19 100.5 160 45.0
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 2.6e-19 99.8 108 60.2
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 3.8e-18 95.9 172 39.5
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.9e-17 93.6 113 50.4
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.9e-17 93.6 127 43.3
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 9.4e-17 91.3 283 34.3
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.4e-17 91.3 111 53.2
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 3.6e-16 89.4 202 37.1
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 6.7e-15 85.1 187 39.6
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 8.8e-15 84.7 43 90.7
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.2e-14 84.3 81 59.3
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 2.6e-14 83.2 40 95.0
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 7.0e-12 75.1 127 44.1
Peaxi162Scf00171g00037 Petunia axillaris HOM05D005752 ORTHO05D006959 1.2e-11 74.3 171 34.5
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 1.6e-11 73.9 66 59.1
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.0e-11 73.6 135 38.5
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 2.7e-11 73.2 56 69.6
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 2.7e-11 73.2 108 48.1
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.0e-10 71.2 42 85.7
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 4.0e-07 59.3 112 41.1
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 3.4e-06 56.2 90 46.7


User provided reference genes

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