Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 7.7e-40 166.8 89 100.0
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.1e-35 152.9 87 90.8
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.0e-35 152.1 87 89.7
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 5.3e-33 144.1 89 82.0
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 5.0e-31 137.5 86 79.1
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 4.2e-30 134.4 84 77.4
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 9.4e-30 133.3 87 80.5
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.6e-29 132.5 87 73.6
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.6e-29 131.3 87 72.4
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 4.7e-29 131.0 86 75.6
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 6.1e-29 130.6 87 71.3
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 6.1e-29 130.6 87 71.3
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 6.1e-29 130.6 87 71.3
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 1.0e-28 129.8 86 73.3
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 1.8e-28 129.0 85 74.1
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.8e-28 129.0 86 74.4
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.8e-28 129.0 83 79.5
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.3e-28 128.6 86 73.3
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.0e-28 128.3 86 74.4
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.0e-28 128.3 86 74.4
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 5.2e-28 127.5 85 72.9
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 8.8e-28 126.7 86 73.3
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 1.5e-27 125.9 82 76.8
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.0e-27 125.6 86 72.1
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.0e-27 125.6 86 70.9
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 2.6e-27 125.2 85 74.1
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 3.3e-27 124.8 86 74.4
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 3.3e-27 124.8 87 74.7
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.3e-27 124.8 87 72.4
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 4.4e-27 124.4 87 73.6
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 5.7e-27 124.0 83 73.5
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 5.7e-27 124.0 83 75.9
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 5.7e-27 124.0 86 70.9
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 5.7e-27 124.0 83 74.7
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 7.5e-27 123.6 86 73.3
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 7.5e-27 123.6 82 73.2
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 9.7e-27 123.2 85 72.9
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 9.7e-27 123.2 86 72.1
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 9.7e-27 123.2 83 73.5
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 9.7e-27 123.2 83 71.1
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 9.7e-27 123.2 83 73.5
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 9.7e-27 123.2 83 75.9
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 9.7e-27 123.2 87 72.4
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.3e-26 122.9 83 73.5
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.3e-26 122.9 82 74.4
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 1.7e-26 122.5 87 69.0
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.2e-26 122.1 85 71.8
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.8e-26 121.7 85 71.8
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 2.8e-26 121.7 87 69.0
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 3.7e-26 121.3 87 67.8
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 4.8e-26 120.9 85 70.6
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 4.8e-26 120.9 86 68.6
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 4.8e-26 120.9 85 70.6
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 6.3e-26 120.6 86 70.9
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 6.3e-26 120.6 85 69.4
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.3e-26 120.6 85 70.6
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.3e-26 120.6 85 69.4
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 6.3e-26 120.6 82 73.2
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 6.3e-26 120.6 87 70.1
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 8.3e-26 120.2 85 71.8
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 8.3e-26 120.2 85 71.8
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.1e-25 119.8 85 70.6
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.1e-25 119.8 85 68.2
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.1e-25 119.8 85 68.2
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.1e-25 119.8 86 68.6
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 1.4e-25 119.4 87 71.3
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.4e-25 119.4 83 69.9
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 1.8e-25 119.0 86 66.3
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.4e-25 118.6 85 70.6
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 2.4e-25 118.6 84 71.4
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.4e-25 118.6 83 71.1
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 5.3e-25 117.5 82 70.7
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.3e-25 117.5 82 72.0
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 5.3e-25 117.5 82 72.0
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 5.3e-25 117.5 83 67.5
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 7.0e-25 117.1 83 71.1
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 7.0e-25 117.1 87 70.1
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 1.2e-24 116.3 84 71.4
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.6e-24 115.9 85 68.2
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 2.7e-24 115.2 83 66.3
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 2.7e-24 115.2 85 62.4
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 5.9e-24 114.0 85 64.7
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 5.9e-24 114.0 87 65.5
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.0e-23 113.2 81 69.1
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 1.3e-23 112.8 87 63.2
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.2e-23 112.1 86 60.5
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 2.2e-23 112.1 82 69.5
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 3.8e-23 111.3 86 66.3
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 3.2e-22 108.2 78 74.4
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.5e-22 107.5 78 70.5
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 9.4e-22 106.7 84 64.3
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.6e-21 105.9 84 65.5
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.6e-21 105.9 84 64.3
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 3.6e-21 104.8 83 62.7
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 8.0e-21 103.6 84 61.9
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 8.0e-21 103.6 84 60.7
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 1.8e-20 102.4 80 65.0
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 4.0e-20 101.3 72 68.1
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 5.2e-20 100.9 84 63.1
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 5.2e-20 100.9 87 54.0
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 8.8e-20 100.1 83 59.0
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 8.8e-20 100.1 83 59.0
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.5e-19 99.4 83 59.0
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 2.0e-19 99.0 83 59.0
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 4.4e-19 97.8 83 57.8
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 4.4e-19 97.8 83 57.8
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 4.4e-19 97.8 88 52.3
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 5.7e-19 97.4 69 71.0
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 7.5e-19 97.1 81 59.3
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 9.8e-19 96.7 83 57.8
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 9.8e-19 96.7 84 56.0
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 9.8e-19 96.7 83 57.8
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 9.8e-19 96.7 62 75.8
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.7e-18 95.9 85 56.5
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.7e-18 95.9 83 57.8
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 2.8e-18 95.1 83 57.8
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 3.7e-18 94.7 84 56.0
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 3.7e-18 94.7 83 56.6
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 3.7e-18 94.7 84 56.0
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.7e-18 94.7 67 70.1
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 4.8e-18 94.4 83 56.6
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 6.3e-18 94.0 84 54.8
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 6.3e-18 94.0 68 66.2
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.1e-17 93.2 61 75.4
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 56.6
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 55.4
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 56.6
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 56.6
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 2.4e-17 92.0 84 52.4
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 3.1e-17 91.7 73 60.3
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.1e-17 91.7 84 51.2
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 5.4e-17 90.9 80 60.0
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 5.4e-17 90.9 87 56.3
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 1.6e-16 89.4 81 63.0
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.7e-16 88.6 88 53.4
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.9e-14 82.4 74 58.1
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.9e-14 82.4 74 58.1
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 2.5e-14 82.0 74 58.1
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 4.2e-14 81.3 56 73.2
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 5.5e-14 80.9 74 56.8
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 2.1e-13 79.0 82 46.3
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 3.6e-13 78.2 59 62.7
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 1.0e-12 76.6 73 56.2
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.2e-11 73.2 84 48.8
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.4e-09 66.2 66 50.0
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.8e-09 65.9 56 60.7
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 1.2e-08 63.2 39 79.5
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.6e-08 62.8 83 45.8
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.7e-08 62.0 74 44.6
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 2.9e-07 58.5 35 85.7
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 3.3e-06 55.1 80 35.0


User provided reference genes

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