Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 5.1e-31 137.1 70 100.0
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 2.2e-29 131.7 70 97.1
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 1.1e-25 119.4 70 84.3
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 1.5e-22 109.0 69 78.3
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 5.2e-15 84.0 49 79.6
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 1.1e-14 82.8 49 79.6
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 2.6e-14 81.6 49 77.6
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 2.6e-14 81.6 49 73.5
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 5.7e-14 80.5 52 75.0
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 5.7e-14 80.5 52 75.0
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 7.4e-14 80.1 49 75.5
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 7.4e-14 80.1 49 75.5
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 7.4e-14 80.1 49 75.5
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 7.4e-14 80.1 49 75.5
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 7.4e-14 80.1 52 71.2
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.7e-13 79.0 52 73.1
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 2.2e-13 78.6 49 77.6
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 2.2e-13 78.6 52 71.2
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 2.8e-13 78.2 52 67.3
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 3.7e-13 77.8 49 73.5
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 4.8e-13 77.4 49 77.6
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 4.8e-13 77.4 49 77.6
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 6.3e-13 77.0 51 70.6
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 8.2e-13 76.6 38 97.4
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 8.2e-13 76.6 52 69.2
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 1.1e-12 76.3 52 71.2
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 1.1e-12 76.3 49 71.4
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 1.1e-12 76.3 49 75.5
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 2.4e-12 75.1 49 73.5
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 4.1e-12 74.3 49 67.3
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 4.1e-12 74.3 52 69.2
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 5.3e-12 73.9 54 66.7
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 7.0e-12 73.6 49 67.3
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 7.0e-12 73.6 49 71.4
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 9.1e-12 73.2 49 67.3
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 9.1e-12 73.2 49 69.4
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 9.1e-12 73.2 49 67.3
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 1.2e-11 72.8 49 65.3
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 1.6e-11 72.4 49 63.3
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 1.6e-11 72.4 49 75.5
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 2.0e-11 72.0 49 69.4
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 2.6e-11 71.6 49 63.3
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 2.6e-11 71.6 49 69.4
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 5.9e-11 70.5 49 59.2
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 7.7e-11 70.1 49 63.3
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 7.7e-11 70.1 49 65.3
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 1.0e-10 69.7 49 57.1
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 1.0e-10 69.7 48 66.7
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 1.3e-10 69.3 46 69.6
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 1.7e-10 68.9 47 63.8
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 2.9e-10 68.2 49 69.4
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 5.0e-10 67.4 51 58.8
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 5.0e-10 67.4 49 65.3
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 6.5e-10 67.0 52 55.8
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 6.5e-10 67.0 52 55.8
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 8.5e-10 66.6 49 59.2
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 1.1e-09 66.2 52 59.6
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 1.1e-09 66.2 49 57.1
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 1.1e-09 66.2 49 57.1
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 1.5e-09 65.9 52 55.8
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 1.5e-09 65.9 49 59.2
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 2.5e-09 65.1 48 62.5
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 4.2e-09 64.3 54 55.6
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 5.5e-09 63.9 60 48.3
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 9.4e-09 63.2 49 55.1
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 9.4e-09 63.2 49 55.1
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 9.4e-09 63.2 49 55.1
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 1.2e-08 62.8 49 53.1
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 1.6e-08 62.4 46 58.7
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 1.6e-08 62.4 46 56.5
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 2.7e-08 61.6 60 48.3
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 2.7e-08 61.6 49 53.1
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 2.7e-08 61.6 60 46.7
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 8.8e-07 56.6 50 50.0
Os03g0603500 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 5.7e-06 53.9 48 52.1


User provided reference genes

Program Settings