Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 8.9e-73 277.3 196 100.0
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 1.5e-64 250.0 198 92.9
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 2.9e-63 245.7 198 92.4
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 9.6e-51 204.1 196 82.1
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 1.5e-40 170.2 198 72.7
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 4.5e-40 168.7 162 85.8
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 5.8e-40 168.3 171 81.3
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 8.4e-39 164.5 193 74.6
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 1.4e-38 163.7 200 69.5
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 4.2e-38 162.2 193 74.1
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 5.4e-38 161.8 165 80.0
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 2.7e-37 159.5 192 73.4
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 1.3e-36 157.1 201 69.2
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 1.8e-36 156.8 162 82.1
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 5.1e-36 155.2 192 72.9
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 5.1e-36 155.2 192 72.9
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 8.7e-36 154.5 163 80.4
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 2.5e-35 152.9 198 70.7
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 3.3e-35 152.5 174 77.0
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 5.6e-35 151.8 173 75.7
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 5.6e-35 151.8 160 80.6
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 9.6e-35 151.0 152 82.9
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 8.1e-34 147.9 174 73.6
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 1.8e-33 146.7 201 69.7
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 3.1e-33 146.0 169 74.0
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 1.2e-32 144.1 170 74.7
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 2.0e-32 143.3 173 74.6
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 2.6e-32 142.9 162 75.9
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 3.4e-32 142.5 167 76.6
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 4.5e-32 142.1 162 75.3
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 5.8e-32 141.7 200 67.5
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 5.8e-32 141.7 173 70.5
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 7.6e-32 141.4 193 69.4
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 2.2e-31 139.8 200 67.5
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 2.2e-31 139.8 165 76.4
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 2.2e-31 139.8 176 72.7
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 3.8e-31 139.0 141 83.7
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 6.4e-31 138.3 203 60.6
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 1.4e-30 137.1 186 69.4
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.9e-30 136.7 163 75.5
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 2.5e-30 136.3 176 72.7
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 3.2e-30 136.0 192 67.2
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 3.2e-30 136.0 225 60.4
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 2.7e-29 132.9 172 69.2
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 3.5e-29 132.5 191 69.6
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 3.9e-28 129.0 195 65.6
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 5.1e-28 128.6 195 66.7
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 5.1e-28 128.6 173 69.9
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 5.1e-28 128.6 172 72.7
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 6.7e-28 128.3 143 76.2
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 8.7e-28 127.9 172 72.1
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 1.9e-27 126.7 190 70.0
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 5.6e-27 125.2 169 68.0
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 2.1e-26 123.2 194 64.9
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 1.4e-25 120.6 170 67.6
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 2.4e-25 119.8 200 62.5
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 2.4e-25 119.8 196 65.3
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 2.0e-24 116.7 198 64.6
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 7.6e-24 114.8 154 70.1
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 7.6e-24 114.8 143 76.2
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 1.3e-23 114.0 122 84.4
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 2.2e-23 113.2 187 64.2
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 2.2e-23 113.2 196 63.3
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 3.8e-23 112.5 189 62.4
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 1.1e-22 110.9 198 62.6
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 1.4e-22 110.5 168 64.9
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 2.5e-22 109.8 168 64.9
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 3.2e-22 109.4 168 64.9
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 3.2e-22 109.4 168 64.9
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 3.2e-22 109.4 134 76.9
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 3.2e-22 109.4 167 66.5
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 3.2e-22 109.4 199 61.3
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 3.2e-22 109.4 176 65.3
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 4.2e-22 109.0 131 78.6
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 4.2e-22 109.0 131 78.6
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 5.5e-22 108.6 169 66.3
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 5.5e-22 108.6 168 64.9
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 1.2e-21 107.5 133 79.7
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 2.1e-21 106.7 188 56.9
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 3.5e-21 105.9 178 61.2
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 4.6e-21 105.5 164 67.1
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 6.0e-21 105.1 176 65.9
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 7.9e-21 104.8 194 60.3
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 7.9e-21 104.8 134 77.6
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 1.8e-20 103.6 149 71.8
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.8e-20 103.6 168 61.3
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 1.8e-20 103.6 189 56.6
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 3.0e-20 102.8 171 65.5
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 8.7e-20 101.3 117 82.1
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 1.5e-19 100.5 168 66.7
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 5.7e-19 98.6 89 79.8
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 5.7e-19 98.6 130 77.7
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 7.4e-19 98.2 164 60.4
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 1.3e-18 97.4 168 61.3
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 1.3e-18 97.4 172 59.9
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 1.3e-18 97.4 165 67.3
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 1.6e-18 97.1 167 65.9
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 3.7e-18 95.9 168 61.3
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 8.2e-18 94.7 67 71.6
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 1.4e-17 94.0 91 79.1
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 5.3e-17 92.0 150 66.7
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 1.2e-16 90.9 67 70.1
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 1.5e-16 90.5 161 39.8
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 2.6e-16 89.7 67 74.6
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 2.6e-16 89.7 141 64.5
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 1.0e-15 87.8 176 57.4
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 3.6e-13 79.3 150 60.0
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 2.0e-11 73.6 111 55.9
unitig_0.g5 Utricularia gibba HOM05D000887 ORTHO05D000908 5.3e-09 65.5 120 68.3


User provided reference genes

Program Settings