Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.0e-182 643.3 327 100.0
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.7e-156 556.2 337 84.3
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.6e-146 523.1 340 80.9
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 6.3e-140 501.1 307 83.4
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 7.1e-99 364.8 345 58.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 9.2e-99 364.4 345 59.1
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 1.7e-97 360.1 346 58.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 4.3e-96 355.5 340 58.5
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 8.1e-95 351.3 308 59.7
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 8.9e-94 347.8 370 54.9
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.0e-93 346.7 345 55.7
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.6e-93 346.3 332 58.1
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 8.4e-92 341.3 305 61.0
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 4.2e-91 339.0 310 59.4
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 5.4e-91 338.6 352 55.7
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 9.3e-91 337.8 277 63.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.2e-90 337.4 342 56.4
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 7.3e-88 328.2 342 54.7
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 2.4e-86 323.2 347 54.2
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.5e-85 320.5 299 57.9
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.5e-85 320.5 302 57.6
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.4e-85 319.3 336 55.4
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 7.6e-85 318.2 339 54.6
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 8.4e-84 314.7 302 59.9
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 2.4e-83 313.2 304 58.9
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 2.7e-82 309.7 348 53.7
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 4.6e-82 308.9 348 53.4
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 7.8e-82 308.1 340 53.2
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.3e-81 307.4 332 54.5
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.3e-81 307.4 352 53.7
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.3e-81 307.4 297 57.2
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 8.7e-81 304.7 342 51.8
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.1e-80 304.3 214 71.0
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.5e-80 303.9 343 52.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 2.5e-80 303.1 341 54.0
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 5.6e-80 302.0 288 58.7
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 5.6e-80 302.0 299 58.5
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 7.3e-80 301.6 350 50.6
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.6e-79 300.4 346 52.9
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.1e-79 300.1 378 47.9
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.1e-78 297.7 288 58.0
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 2.4e-78 296.6 337 52.5
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.4e-78 296.6 279 56.6
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.4e-78 296.6 300 57.0
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 4.0e-78 295.8 287 57.5
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 5.3e-78 295.4 346 52.0
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-77 294.3 344 52.0
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.2e-77 294.3 344 52.0
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.2e-77 294.3 249 62.7
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.5e-77 293.9 343 51.6
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 3.4e-77 292.7 342 52.3
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 3.4e-77 292.7 342 52.3
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 5.8e-77 292.0 300 54.7
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 7.6e-77 291.6 302 56.3
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 9.9e-77 291.2 249 61.8
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.3e-76 290.8 254 62.6
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 3.8e-76 289.3 367 50.1
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.4e-75 286.6 272 59.2
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.2e-74 284.3 355 50.1
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.2e-74 284.3 260 60.8
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.6e-74 283.9 307 54.1
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 3.5e-74 282.7 272 57.4
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 6.0e-74 282.0 351 49.9
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.3e-73 280.8 280 54.6
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.8e-73 280.4 325 51.1
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.3e-73 280.0 218 65.6
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.9e-73 279.3 280 56.1
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 6.7e-73 278.5 280 55.7
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 6.7e-73 278.5 280 55.7
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 6.7e-73 278.5 338 50.3
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 1.1e-72 277.7 231 62.3
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 3.3e-72 276.2 277 55.2
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.8e-70 270.4 345 48.1
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.5e-69 267.3 295 53.2
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 2.0e-69 266.9 282 51.8
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 5.8e-69 265.4 257 57.2
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.6e-69 265.0 300 48.3
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.2e-68 263.5 344 46.5
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.5e-68 261.9 308 49.4
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 2.7e-66 256.5 197 67.0
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.6e-66 255.8 304 47.4
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-63 247.3 326 46.0
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.1e-63 246.9 338 43.8
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 4.8e-63 245.7 215 61.9
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 8.2e-63 245.0 235 57.4
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.4e-62 243.4 223 58.7
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.1e-62 243.0 224 59.4
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.8e-61 238.8 210 56.7
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.8e-60 236.1 360 44.2
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 7.1e-59 231.9 201 59.7
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 9.3e-59 231.5 201 59.2
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 3.0e-57 226.5 208 62.5
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 2.5e-56 223.4 206 55.8
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 6.3e-55 218.8 205 55.6
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 8.2e-55 218.4 221 51.6
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 3.1e-54 216.5 215 53.0
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 4.5e-53 212.6 280 47.9
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.7e-50 203.4 202 54.0
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 3.6e-50 203.0 352 41.5
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 4.6e-50 202.6 268 46.3
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.4e-49 201.1 197 53.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.7e-44 184.1 281 41.6
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.2e-44 183.7 302 40.7
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 5.5e-43 179.1 345 38.6
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.2e-42 177.9 219 44.7
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.1e-42 175.6 270 41.5
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 7.9e-42 175.3 356 39.6
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.0e-41 174.9 200 49.0
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.0e-41 174.9 162 56.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.4e-40 168.7 130 67.7
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 9.7e-40 168.3 165 58.8
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.7e-39 167.5 304 40.8
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.2e-39 167.2 158 55.7
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.2e-39 167.2 277 40.1
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-38 164.5 124 69.4
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 5.3e-38 162.5 197 46.7
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 9.1e-38 161.8 261 41.0
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.3e-36 157.9 250 40.8
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.7e-36 157.5 251 41.0
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.9e-36 156.8 133 63.2
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.0e-36 156.0 290 37.6
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 3.2e-35 153.3 207 41.5
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 9.4e-35 151.8 242 40.9
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 3.6e-34 149.8 297 39.1
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 6.1e-34 149.1 110 69.1
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 5.2e-33 146.0 366 33.9
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 6.7e-33 145.6 307 35.8
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 4.4e-32 142.9 114 61.4
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 2.2e-31 140.6 228 40.8
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 2.2e-31 140.6 283 36.0
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.2e-31 140.6 234 40.2
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.1e-30 138.3 184 47.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 2.4e-30 137.1 159 49.1
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.6e-29 134.4 101 71.3
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 5.0e-28 129.4 136 49.3
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 4.2e-27 126.3 93 67.7
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.6e-26 123.2 281 34.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.3e-25 120.6 171 45.0
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 7.5e-24 115.5 76 75.0
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 3.7e-23 113.2 73 72.6
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.3e-23 112.5 73 71.2
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-17 92.0 97 44.3
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 9.8e-16 88.6 159 38.4
CsaV3_1G006110 Cucumis sativus L. HOM05D056162 ORTHO05D044998 2.2e-15 87.4 124 47.6
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.8e-14 84.3 79 60.8
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 5.4e-14 82.8 70 61.4
MELO3C035765.2 Cucumis melo HOM05D056162 ORTHO05D044998 1.0e-12 78.6 125 46.4
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 9.5e-11 72.0 84 44.0
MELO3C034996.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.1e-10 70.9 41 82.9
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-09 68.2 42 71.4
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.7e-08 62.8 43 67.4


User provided reference genes

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