Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.5e-155 553.1 350 100.0
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 8.0e-125 451.1 355 85.1
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.6e-112 410.2 353 80.2
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.7e-106 390.2 350 64.6
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.8e-76 290.4 349 51.0
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 7.6e-75 285.0 351 51.9
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.7e-72 276.6 352 49.4
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.0e-71 274.6 373 48.5
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.0e-71 274.6 351 51.6
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.8e-71 273.9 350 49.1
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.3e-71 273.5 353 50.4
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 3.0e-71 273.1 348 48.6
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 4.3e-70 269.2 356 52.8
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.6e-69 267.3 370 46.8
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.2e-69 265.4 356 48.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.1e-68 264.6 351 56.7
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.4e-68 264.2 351 48.7
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 5.8e-67 258.8 347 48.4
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.6e-67 258.5 351 47.9
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.4e-65 254.2 346 46.5
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 4.6e-64 249.2 351 47.0
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 7.9e-64 248.4 345 55.9
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 7.9e-64 248.4 346 47.7
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 3.0e-63 246.5 347 47.0
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 3.9e-63 246.1 348 46.6
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 6.7e-63 245.4 354 46.9
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 8.7e-63 245.0 351 46.2
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.1e-62 244.6 346 46.5
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.2e-61 240.4 301 51.2
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.4e-60 237.7 305 50.2
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.1e-60 236.1 356 45.2
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.2e-59 234.6 348 46.0
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.7e-58 230.7 349 46.7
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.5e-58 228.4 351 44.4
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 2.5e-57 226.9 320 46.2
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.7e-56 223.4 350 43.7
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 3.0e-55 219.9 350 43.4
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 3.9e-55 219.5 351 44.4
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 6.7e-55 218.8 360 47.5
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 6.7e-55 218.8 330 45.5
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.1e-54 218.0 349 41.5
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 3.3e-54 216.5 351 52.7
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 3.3e-54 216.5 351 43.9
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 3.3e-54 216.5 346 44.2
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 4.3e-54 216.1 353 41.9
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 2.2e-53 213.8 354 42.7
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 4.8e-53 212.6 384 41.7
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.2e-53 211.8 346 42.2
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.4e-52 211.1 349 41.8
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.4e-52 211.1 354 41.8
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.4e-52 211.1 281 59.4
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.8e-52 210.7 346 43.4
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.8e-52 210.7 346 41.9
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 5.3e-52 209.1 346 42.8
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 6.9e-52 208.8 350 42.9
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 3.8e-50 203.0 374 40.6
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 6.5e-50 202.2 346 40.2
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.4e-49 201.1 362 41.4
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 3.2e-49 199.9 359 40.1
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 5.5e-49 199.1 509 34.2
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 9.4e-49 198.4 358 41.6
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 9.4e-49 198.4 355 41.1
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.6e-48 197.6 379 40.6
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 3.6e-48 196.4 345 39.4
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 3.6e-48 196.4 317 43.8
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 2.3e-47 193.7 352 41.8
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 3.0e-47 193.4 347 40.9
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.9e-47 193.0 357 41.2
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 5.1e-47 192.6 349 50.4
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.5e-46 191.0 352 43.8
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.6e-46 190.3 362 40.3
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 3.3e-46 189.9 320 53.4
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 4.4e-46 189.5 345 38.6
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 5.7e-46 189.1 344 44.2
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 9.7e-46 188.3 354 39.5
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.7e-45 187.6 355 40.3
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 2.2e-45 187.2 347 41.2
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 8.2e-45 185.3 352 40.3
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.8e-44 184.1 376 39.1
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 4.1e-44 183.0 336 41.4
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 4.5e-43 179.5 351 37.6
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 7.7e-43 178.7 354 38.7
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.0e-42 178.3 337 38.0
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.2e-42 177.2 337 39.5
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.2e-42 177.2 337 39.5
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 6.5e-42 175.6 337 43.0
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.1e-41 174.9 259 46.3
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.4e-41 174.5 351 36.8
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.9e-41 174.1 343 36.7
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 4.2e-41 172.9 352 38.6
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 5.5e-41 172.6 307 41.7
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.7e-40 170.2 346 37.0
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 6.1e-40 169.1 349 37.0
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.0e-39 168.3 346 41.0
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.4e-39 167.9 349 45.6
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.4e-39 167.9 291 43.3
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.4e-39 167.9 300 37.7
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 2.3e-39 167.2 346 38.7
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.2e-35 154.8 295 40.3
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 2.0e-35 154.1 239 43.9
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.6e-35 153.7 328 37.2
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 5.9e-35 152.5 238 42.9
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 2.9e-34 150.2 350 36.0
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.8e-34 149.8 295 40.0
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.1e-33 148.3 319 36.7
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.5e-33 147.1 127 68.5
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 3.2e-33 146.7 430 30.7
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.2e-33 146.4 295 38.3
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.2e-32 144.8 337 33.8
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.6e-32 144.4 292 36.6
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 2.7e-32 143.7 345 34.8
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.7e-32 143.7 339 36.3
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.0e-31 141.7 350 37.1
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-30 138.3 352 34.4
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 2.0e-30 137.5 257 39.3
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.7e-29 134.4 329 45.6
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 8.3e-29 132.1 329 45.9
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.4e-28 131.3 292 32.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 9.1e-28 128.6 256 38.7
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.2e-27 128.3 303 32.3
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.7e-27 127.1 289 36.0
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 3.5e-27 126.7 289 32.9
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.3e-26 124.8 288 43.4
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 3.8e-26 123.2 308 34.7
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 5.0e-26 122.9 299 33.8
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.1e-24 115.9 131 56.5
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 2.0e-22 110.9 197 46.7
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.4e-20 104.0 88 59.1
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 9.1e-20 102.1 289 30.1
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 2.0e-19 100.9 104 54.8
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 5.9e-19 99.4 108 51.9
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 3.8e-18 96.7 109 56.0
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.5e-17 94.7 315 28.9
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.7e-14 82.8 79 63.3
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 2.8e-13 80.5 241 29.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 5.4e-12 76.3 298 27.5
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.9e-09 67.8 196 30.6
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 6.1e-08 62.8 87 46.0
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 1.0e-07 62.0 88 40.9
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 3.1e-07 60.5 78 47.4
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.2e-06 58.5 345 22.6
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 5.8e-06 56.2 131 30.5
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 7.5e-06 55.8 51 64.7


User provided reference genes

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