Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.6e-103 379.4 188 100.0
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.3e-41 173.7 102 81.4
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 7.3e-32 141.4 104 72.1
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.4e-19 100.5 94 56.4
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.9e-19 100.1 94 56.4
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 5.4e-19 98.6 92 55.4
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 2.7e-18 96.3 93 55.9
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 7.8e-18 94.7 95 55.8
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 6.6e-17 91.7 93 54.8
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 8.7e-17 91.3 93 54.8
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 8.7e-17 91.3 93 54.8
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.3e-16 89.0 86 55.8
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.1e-15 86.7 103 53.4
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 6.2e-15 85.1 100 50.0
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.1e-14 84.3 44 90.9
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 3.1e-14 82.8 92 51.1
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 4.0e-14 82.4 94 48.9
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.0e-14 82.4 94 48.9
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.0e-14 82.4 94 48.9
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 5.3e-14 82.0 75 52.0
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.9e-14 81.6 92 51.1
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 6.9e-14 81.6 62 62.9
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.5e-13 80.5 61 68.9
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 2.0e-13 80.1 92 50.0
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 2.0e-13 80.1 66 65.2
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.0e-13 80.1 76 56.6
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.0e-13 80.1 106 47.2
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.4e-13 79.3 92 50.0
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.8e-13 78.6 77 55.8
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 7.6e-13 78.2 75 50.7
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 7.6e-13 78.2 75 49.3
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 7.6e-13 78.2 75 54.7
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 7.6e-13 78.2 76 53.9
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.9e-13 77.8 93 47.3
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 9.9e-13 77.8 77 54.5
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.3e-12 77.4 111 43.2
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.2e-12 76.6 75 56.0
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.9e-12 76.3 73 58.9
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.9e-12 76.3 62 59.7
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.9e-12 76.3 62 59.7
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.9e-12 75.5 53 67.9
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 4.9e-12 75.5 78 52.6
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 4.9e-12 75.5 50 72.0
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 6.4e-12 75.1 50 72.0
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 6.4e-12 75.1 66 59.1
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-11 74.3 75 56.0
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.1e-11 74.3 61 60.7
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 2.4e-11 73.2 70 55.7
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 2.4e-11 73.2 49 65.3
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.4e-11 73.2 50 70.0
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 3.2e-11 72.8 97 43.3
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 3.2e-11 72.8 44 72.7
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 3.2e-11 72.8 53 67.9
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.2e-11 72.4 91 48.4
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 4.2e-11 72.4 53 66.0
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 5.4e-11 72.0 44 75.0
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 5.4e-11 72.0 53 62.3
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.1e-11 71.6 61 57.4
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 7.1e-11 71.6 76 52.6
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 9.3e-11 71.2 85 47.1
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 9.3e-11 71.2 44 72.7
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.2e-10 70.9 75 53.3
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.6e-10 70.5 52 63.5
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 1.6e-10 70.5 44 72.7
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.6e-10 70.5 91 49.5
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.6e-10 70.5 53 62.3
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 2.1e-10 70.1 44 70.5
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 2.1e-10 70.1 50 64.0
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 2.1e-10 70.1 91 49.5
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.1e-10 70.1 53 62.3
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 3.5e-10 69.3 99 45.5
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 3.5e-10 69.3 44 72.7
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 3.5e-10 69.3 64 56.2
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 4.6e-10 68.9 53 58.5
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 6.0e-10 68.6 101 44.6
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.0e-09 67.8 44 72.7
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.3e-09 67.4 44 68.2
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.3e-09 67.4 50 64.0
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.3e-09 67.4 74 50.0
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.8e-09 67.0 61 59.0
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 1.8e-09 67.0 44 68.2
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 1.8e-09 67.0 43 72.1
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 2.3e-09 66.6 53 58.5
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 3.0e-09 66.2 66 51.5
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 5.1e-09 65.5 61 55.7
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 6.7e-09 65.1 46 65.2
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 6.7e-09 65.1 53 58.5
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.7e-09 64.7 71 50.7
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.1e-08 64.3 50 60.0
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 1.5e-08 63.9 42 69.0
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.5e-08 63.9 44 61.4
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.9e-08 63.5 44 68.2
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 2.5e-08 63.2 44 59.1
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 3.3e-08 62.8 57 54.4
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 3.3e-08 62.8 52 51.9
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 3.3e-08 62.8 46 63.0
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 4.3e-08 62.4 54 57.4
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 5.6e-08 62.0 44 59.1
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 5.6e-08 62.0 44 56.8
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 5.6e-08 62.0 73 45.2
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 7.4e-08 61.6 43 62.8
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 7.4e-08 61.6 43 62.8
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 7.4e-08 61.6 43 62.8
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 7.4e-08 61.6 43 62.8
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 7.4e-08 61.6 43 62.8
MBI19_g14978_MAGBIO Magnolia biondii HOM05D006108 ORTHO05D007605 7.4e-08 61.6 93 41.9
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 7.4e-08 61.6 45 62.2
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 7.4e-08 61.6 62 54.8
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.3e-07 60.8 50 56.0
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 1.3e-07 60.8 43 62.8
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.6e-07 60.5 44 54.5
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 2.1e-07 60.1 91 38.5
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 4.8e-07 58.9 52 55.8
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 6.2e-07 58.5 43 60.5
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 8.1e-07 58.2 47 51.1
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.1e-06 57.8 54 51.9
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.4e-06 57.4 44 50.0
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.8e-06 57.0 43 48.8
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.8e-06 57.0 43 48.8
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.8e-06 57.0 43 48.8
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.4e-06 56.6 45 55.6
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.4e-06 56.6 43 60.5
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 3.1e-06 56.2 55 52.7
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 3.1e-06 56.2 39 64.1
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 4.0e-06 55.8 44 50.0
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 4.0e-06 55.8 43 48.8
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 5.3e-06 55.5 73 37.0
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 5.3e-06 55.5 44 47.7
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 5.3e-06 55.5 41 51.2
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 6.9e-06 55.1 43 55.8


User provided reference genes

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