Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.4e-107 392.1 189 100.0
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 8.3e-52 207.6 95 100.0
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 2.1e-50 203.0 142 69.7
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 7.8e-50 201.1 95 96.8
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 7.8e-50 201.1 95 96.8
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.1e-48 197.2 172 60.5
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 7.3e-48 194.5 95 91.6
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 1.6e-47 193.4 95 90.5
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 8.1e-47 191.0 96 92.7
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 8.1e-47 191.0 96 92.7
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 1.4e-46 190.3 102 86.3
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 1.4e-46 190.3 97 90.7
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 2.4e-46 189.5 100 88.0
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 5.2e-46 188.3 95 86.3
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 5.2e-46 188.3 95 90.5
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 6.8e-46 188.0 95 90.5
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 1.2e-45 187.2 95 87.4
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 1.2e-45 187.2 95 87.4
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.2e-45 187.2 96 89.6
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 1.5e-45 186.8 97 89.7
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 2.0e-45 186.4 96 89.6
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 2.0e-45 186.4 95 87.4
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 2.6e-45 186.0 96 89.6
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 3.4e-45 185.7 96 88.5
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 4.4e-45 185.3 97 87.6
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 4.4e-45 185.3 96 88.5
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 5.8e-45 184.9 101 85.1
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 7.6e-45 184.5 101 83.2
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 9.9e-45 184.1 96 85.4
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 9.9e-45 184.1 96 90.6
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 1.3e-44 183.7 96 87.5
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.3e-44 183.7 96 89.6
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 1.7e-44 183.3 96 87.5
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.2e-44 183.0 96 87.5
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.2e-44 183.0 96 87.5
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 2.2e-44 183.0 96 87.5
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 2.9e-44 182.6 95 89.5
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 2.9e-44 182.6 95 89.5
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 3.8e-44 182.2 96 86.5
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 3.8e-44 182.2 96 86.5
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 4.9e-44 181.8 96 88.5
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.1e-43 180.6 96 86.5
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 1.1e-43 180.6 96 88.5
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.4e-43 180.3 97 84.5
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 1.4e-43 180.3 118 72.9
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 1.4e-43 180.3 96 86.5
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.4e-43 180.3 101 83.2
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.9e-43 179.9 96 86.5
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.9e-43 179.9 96 86.5
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.9e-43 179.9 96 86.5
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 2.4e-43 179.5 95 84.2
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 2.4e-43 179.5 96 87.5
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 3.2e-43 179.1 95 86.3
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 3.2e-43 179.1 96 87.5
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 4.2e-43 178.7 101 80.2
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 5.4e-43 178.3 101 82.2
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 7.1e-43 177.9 95 85.3
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 9.2e-43 177.6 95 84.2
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 9.2e-43 177.6 95 83.2
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 1.2e-42 177.2 97 82.5
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 1.6e-42 176.8 95 84.2
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.6e-42 176.8 95 83.2
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 2.1e-42 176.4 95 84.2
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 2.1e-42 176.4 95 84.2
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 2.7e-42 176.0 95 84.2
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 2.7e-42 176.0 96 84.4
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 2.7e-42 176.0 96 81.2
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 3.5e-42 175.6 95 83.2
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 4.6e-42 175.3 95 83.2
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 7.8e-42 174.5 96 81.2
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 7.8e-42 174.5 97 81.4
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 1.0e-41 174.1 105 78.1
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.0e-41 174.1 95 81.1
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 2.3e-41 172.9 95 84.2
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 3.9e-41 172.2 96 82.3
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 5.1e-41 171.8 96 82.3
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 5.1e-41 171.8 96 82.3
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 1.1e-40 170.6 100 79.0
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 1.5e-40 170.2 99 76.8
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.5e-40 170.2 96 82.3
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.6e-40 168.3 96 81.2
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 5.6e-40 168.3 96 81.2
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 5.6e-40 168.3 105 75.2
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 7.3e-40 167.9 96 80.2
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 9.6e-40 167.5 96 80.2
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 9.6e-40 167.5 96 80.2
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 9.6e-40 167.5 96 81.2
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 9.6e-40 167.5 124 67.7
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 9.6e-40 167.5 96 80.2
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 1.2e-39 167.2 96 78.1
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.2e-39 167.2 96 80.2
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 1.6e-39 166.8 96 80.2
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 1.6e-39 166.8 96 80.2
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 2.1e-39 166.4 96 79.2
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.8e-39 166.0 96 80.2
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 3.6e-39 165.6 96 79.2
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 3.6e-39 165.6 112 68.8
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 3.6e-39 165.6 96 79.2
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 4.7e-39 165.2 96 79.2
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 4.7e-39 165.2 100 76.0
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 6.2e-39 164.9 96 78.1
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 8.1e-39 164.5 96 78.1
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 8.1e-39 164.5 96 78.1
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 8.1e-39 164.5 96 78.1
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 8.1e-39 164.5 96 78.1
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.1e-38 164.1 96 80.2
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 1.1e-38 164.1 104 73.1
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 1.8e-38 163.3 96 78.1
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.8e-38 163.3 96 78.1
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 1.8e-38 163.3 96 78.1
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 1.8e-38 163.3 96 79.2
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 2.4e-38 162.9 96 79.2
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 2.4e-38 162.9 96 79.2
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 2.4e-38 162.9 96 79.2
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 2.4e-38 162.9 96 79.2
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 2.4e-38 162.9 96 79.2
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 3.1e-38 162.5 95 74.7
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 4.0e-38 162.2 95 74.7
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 5.3e-38 161.8 96 77.1
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 5.3e-38 161.8 96 77.1
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 9.0e-38 161.0 96 76.0
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 1.2e-37 160.6 96 78.1
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 1.2e-37 160.6 96 76.0
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 2.6e-37 159.5 96 79.2
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.6e-37 159.5 96 79.2
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.6e-37 159.5 96 79.2
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.6e-37 159.5 96 79.2
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.6e-37 159.5 96 79.2
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 5.8e-37 158.3 96 75.0
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 5.8e-37 158.3 96 75.0
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.3e-36 157.1 95 73.7
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 2.4e-35 152.9 96 72.9
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 6.0e-34 148.3 95 69.5
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 6.6e-33 144.8 84 81.0
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.5e-32 143.7 67 95.5
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.3e-32 142.5 78 78.2
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.4e-30 136.3 103 66.0
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 1.3e-25 120.6 71 76.1
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 3.0e-25 119.4 74 78.4
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 3.0e-25 119.4 74 75.7
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 3.9e-25 119.0 68 80.9
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 5.1e-25 118.6 86 64.0
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 6.7e-25 118.2 85 63.5
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 8.7e-25 117.9 83 66.3
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.1e-24 117.5 85 63.5
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 4.0e-22 109.0 66 77.3
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 4.0e-22 109.0 84 57.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.5e-21 107.1 99 53.5
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 1.8e-17 93.6 49 77.6
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 7.4e-16 88.2 96 52.1
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 2.4e-14 83.2 71 49.3
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 3.1e-14 82.8 68 60.3
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 4.9e-12 75.5 50 70.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 2.1e-10 70.1 54 66.7
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 4.6e-10 68.9 95 38.9
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 1.1e-08 64.3 36 80.6
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 1.5e-08 63.9 36 77.8
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.5e-08 63.9 48 58.3


User provided reference genes

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