Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 8.6e-82 307.0 160 100.0
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 8.1e-56 220.7 161 75.8
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 8.6e-50 200.7 162 73.5
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 9.9e-46 187.2 159 66.0
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 8.7e-18 94.4 128 46.9
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.1e-15 87.4 161 38.5
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 9.0e-15 84.3 132 42.4
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.5e-14 83.6 130 44.6
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.5e-14 83.6 140 40.7
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.5e-14 83.6 77 55.8
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.5e-14 83.6 77 55.8
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 2.0e-14 83.2 162 39.5
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 2.6e-14 82.8 86 51.2
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.4e-14 82.4 81 54.3
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.5e-14 82.0 77 54.5
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 7.6e-14 81.3 93 48.4
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.7e-13 80.1 91 48.4
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.7e-13 80.1 152 37.5
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.7e-13 80.1 148 39.2
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.2e-13 79.7 77 51.9
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 2.9e-13 79.3 149 39.6
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 2.9e-13 79.3 87 49.4
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 3.8e-13 79.0 82 51.2
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 3.8e-13 79.0 130 41.5
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 3.8e-13 79.0 146 39.0
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 6.5e-13 78.2 172 38.4
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 8.4e-13 77.8 171 36.8
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 8.4e-13 77.8 138 38.4
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 8.4e-13 77.8 149 38.9
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 8.4e-13 77.8 78 55.1
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.4e-12 77.0 94 46.8
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.4e-12 77.0 146 38.4
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 1.9e-12 76.6 82 50.0
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-12 76.6 86 48.8
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-12 76.6 86 48.8
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 2.5e-12 76.3 138 39.1
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 2.5e-12 76.3 150 36.0
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 2.5e-12 76.3 94 46.8
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.5e-12 76.3 86 48.8
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 2.5e-12 76.3 118 43.2
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 3.2e-12 75.9 80 48.8
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 3.2e-12 75.9 82 50.0
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 3.2e-12 75.9 159 34.6
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 4.2e-12 75.5 71 53.5
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 5.5e-12 75.1 99 44.4
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 5.5e-12 75.1 104 46.2
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 5.5e-12 75.1 104 46.2
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 7.1e-12 74.7 85 52.9
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 7.1e-12 74.7 77 49.4
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 7.1e-12 74.7 158 41.8
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 7.1e-12 74.7 76 50.0
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 7.1e-12 74.7 111 42.3
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 7.1e-12 74.7 82 51.2
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 9.3e-12 74.3 131 38.9
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.3e-12 74.3 95 47.4
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-11 73.9 151 37.7
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.2e-11 73.9 150 37.3
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.6e-11 73.6 166 38.0
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 1.6e-11 73.6 146 35.6
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 2.1e-11 73.2 131 38.2
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 2.1e-11 73.2 140 37.9
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 2.7e-11 72.8 161 37.3
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 2.7e-11 72.8 164 34.8
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.7e-11 72.8 122 40.2
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 2.7e-11 72.8 102 44.1
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 3.5e-11 72.4 153 39.2
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.5e-11 72.4 153 35.3
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 4.6e-11 72.0 111 43.2
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 4.6e-11 72.0 97 45.4
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 6.1e-11 71.6 111 43.2
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 6.1e-11 71.6 90 46.7
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 6.1e-11 71.6 153 34.0
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 6.1e-11 71.6 97 44.3
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 6.1e-11 71.6 138 39.9
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 6.1e-11 71.6 97 45.4
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 7.9e-11 71.2 166 37.3
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 7.9e-11 71.2 78 48.7
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 1.0e-10 70.9 161 36.0
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.3e-10 70.5 83 47.0
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.3e-10 70.5 155 35.5
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 1.8e-10 70.1 160 36.2
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 1.8e-10 70.1 158 36.7
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 1.8e-10 70.1 133 39.8
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.8e-10 70.1 97 42.3
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-10 70.1 73 50.7
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.3e-10 69.7 83 48.2
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.3e-10 69.7 83 48.2
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 2.3e-10 69.7 158 36.7
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 2.3e-10 69.7 73 50.7
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 2.3e-10 69.7 96 42.7
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 3.0e-10 69.3 81 44.4
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.0e-10 69.3 136 39.0
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 3.9e-10 68.9 76 50.0
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.9e-10 68.9 102 45.1
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 3.9e-10 68.9 124 37.9
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 5.1e-10 68.6 151 37.7
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 5.1e-10 68.6 125 41.6
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 6.7e-10 68.2 116 39.7
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.7e-10 68.2 73 49.3
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.7e-10 68.2 93 45.2
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 8.7e-10 67.8 90 43.3
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 8.7e-10 67.8 136 38.2
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.7e-10 67.8 78 47.4
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.7e-10 67.8 86 44.2
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.1e-09 67.4 55 54.5
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.1e-09 67.4 98 41.8
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.1e-09 67.4 70 51.4
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.1e-09 67.4 83 50.6
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.1e-09 67.4 147 38.1
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.5e-09 67.0 151 31.1
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.5e-09 67.0 129 37.2
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.5e-09 67.0 134 38.8
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 1.5e-09 67.0 134 38.8
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 1.5e-09 67.0 103 42.7
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.9e-09 66.6 91 48.4
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.9e-09 66.6 141 37.6
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-09 66.6 89 43.8
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.9e-09 66.6 100 42.0
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.5e-09 66.2 185 30.8
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 2.5e-09 66.2 92 43.5
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 3.3e-09 65.9 81 44.4
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 4.3e-09 65.5 111 37.8
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 4.3e-09 65.5 138 36.2
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.3e-09 65.5 89 43.8
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.3e-09 65.5 90 42.2
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.3e-09 65.5 90 42.2
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.7e-09 65.1 83 43.4
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 5.7e-09 65.1 95 43.2
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 5.7e-09 65.1 82 45.1
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 7.4e-09 64.7 94 40.4
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 7.4e-09 64.7 139 34.5
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 9.7e-09 64.3 143 40.6
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 9.7e-09 64.3 167 31.7
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 9.7e-09 64.3 70 45.7
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.3e-08 63.9 162 34.0
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.3e-08 63.9 162 34.6
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.3e-08 63.9 96 39.6
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-08 63.9 74 45.9
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 1.6e-08 63.5 156 32.1
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.6e-08 63.5 148 32.4
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-08 62.8 132 33.3
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.8e-08 62.8 89 43.8
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 3.7e-08 62.4 176 33.0
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 4.8e-08 62.0 82 41.5
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 4.8e-08 62.0 124 37.9
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.8e-08 62.0 135 37.0
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 4.8e-08 62.0 93 43.0
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 4.8e-08 62.0 86 43.0
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 4.8e-08 62.0 86 43.0
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 8.2e-08 61.2 63 49.2
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 8.2e-08 61.2 108 38.0
Lj2g0001179 Lotus japonicus HOM05D003094 ORTHO05D003482 8.2e-08 61.2 139 36.7
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 8.2e-08 61.2 98 37.8
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.1e-07 60.8 119 37.8
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 1.1e-07 60.8 134 32.1
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.1e-07 60.8 106 39.6
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 1.8e-07 60.1 78 46.2
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.4e-07 59.7 140 35.0
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 3.1e-07 59.3 140 32.9
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 4.1e-07 58.9 82 39.0
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 5.3e-07 58.5 138 34.1
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.3e-07 58.5 67 47.8
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 5.3e-07 58.5 136 36.0
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 6.9e-07 58.2 86 40.7
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 6.9e-07 58.2 139 35.3
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 6.9e-07 58.2 138 33.3
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 9.0e-07 57.8 155 34.2
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 9.0e-07 57.8 93 39.8
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 1.2e-06 57.4 50 52.0
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 1.5e-06 57.0 82 42.7
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 1.5e-06 57.0 82 42.7
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 1.5e-06 57.0 113 34.5
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 1.5e-06 57.0 92 40.2
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 1.5e-06 57.0 114 38.6
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 2.0e-06 56.6 168 33.9
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 2.0e-06 56.6 139 34.5
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 2.0e-06 56.6 131 35.9
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 2.0e-06 56.6 89 37.1
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 4.5e-06 55.5 103 35.9
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 4.5e-06 55.5 85 42.4
AUR62033800 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.0e-05 54.3 47 53.2


User provided reference genes

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