Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 4.9e-185 651.0 326 100.0
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 6.5e-137 491.1 254 95.7
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 3.2e-136 488.8 254 95.3
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 5.2e-126 454.9 254 89.0
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 7.3e-104 381.3 251 72.9
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 3.2e-99 365.9 253 71.1
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 4.1e-99 365.5 253 71.9
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 9.2e-99 364.4 246 74.0
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 2.0e-98 363.2 247 74.1
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 1.0e-97 360.9 252 70.6
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 1.3e-97 360.5 258 70.2
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 1.3e-97 360.5 258 70.2
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 6.6e-97 358.2 242 71.9
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 1.1e-96 357.5 248 69.8
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 7.3e-96 354.8 251 70.5
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 7.3e-96 354.8 251 70.5
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 7.3e-96 354.8 251 71.7
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 1.6e-95 353.6 245 71.8
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 1.6e-95 353.6 243 68.7
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 6.2e-95 351.7 239 72.0
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 2.3e-94 349.7 246 69.5
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 4.0e-94 349.0 247 68.4
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 6.8e-94 348.2 243 70.8
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 6.8e-94 348.2 251 68.5
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 8.9e-94 347.8 250 70.0
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 1.2e-93 347.4 257 69.3
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 2.0e-93 346.7 288 62.8
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 4.4e-93 345.5 243 69.5
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 4.4e-93 345.5 254 68.5
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 4.4e-93 345.5 252 68.7
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 4.4e-93 345.5 240 71.2
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 4.4e-93 345.5 243 68.7
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 5.8e-93 345.1 247 68.8
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 7.5e-93 344.7 246 67.5
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 7.5e-93 344.7 245 69.4
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 9.9e-93 344.4 246 69.9
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 1.7e-92 343.6 242 69.4
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 2.2e-92 343.2 246 69.5
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 2.9e-92 342.8 251 69.3
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 4.9e-92 342.0 250 66.8
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 4.9e-92 342.0 246 67.5
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 6.4e-92 341.7 250 69.2
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 8.3e-92 341.3 246 68.3
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 1.9e-91 340.1 245 67.8
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 1.9e-91 340.1 249 67.5
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 5.4e-91 338.6 251 66.5
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 1.2e-90 337.4 238 72.3
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 1.6e-90 337.0 241 71.0
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 2.7e-90 336.3 249 66.7
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 3.5e-90 335.9 248 64.9
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 3.5e-90 335.9 246 68.7
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 1.3e-89 334.0 248 66.9
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 3.0e-89 332.8 246 67.1
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 3.0e-89 332.8 255 65.9
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 3.9e-89 332.4 240 68.8
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 5.1e-89 332.0 251 65.7
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 1.1e-88 330.9 248 66.1
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 1.1e-88 330.9 243 67.5
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 1.5e-88 330.5 255 65.1
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.5e-88 330.5 255 65.1
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 1.9e-88 330.1 251 64.1
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.5e-88 329.7 255 64.7
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 2.5e-88 329.7 238 66.0
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 4.3e-88 328.9 248 65.7
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 5.6e-88 328.6 248 66.5
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 5.6e-88 328.6 248 66.5
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 7.3e-88 328.2 255 64.3
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 1.2e-87 327.4 246 66.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-87 327.4 248 65.7
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-87 327.4 248 66.1
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.2e-87 327.4 248 65.7
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 1.2e-87 327.4 248 66.5
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 1.6e-87 327.0 248 66.1
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 1.6e-87 327.0 248 65.3
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 2.8e-87 326.2 246 65.9
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 3.6e-87 325.9 248 65.3
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 6.2e-87 325.1 251 66.1
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 6.2e-87 325.1 244 66.4
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 1.4e-86 323.9 243 66.7
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 1.4e-86 323.9 248 65.3
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 1.8e-86 323.6 246 65.0
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 2.4e-86 323.2 238 69.7
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 8.9e-86 321.2 242 67.4
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 7.6e-85 318.2 243 66.3
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.7e-84 317.0 258 62.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.9e-84 316.2 239 67.8
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 3.8e-84 315.8 251 64.1
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 9.2e-83 311.2 237 67.1
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 3.3e-80 302.8 240 62.9
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 5.6e-80 302.0 238 61.3
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 9.6e-80 301.2 262 61.1
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 1.2e-79 300.8 223 67.3
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 1.4e-78 297.4 250 60.8
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 4.0e-78 295.8 240 60.8
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 2.0e-77 293.5 193 73.1
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 1.3e-76 290.8 236 63.1
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 2.2e-76 290.0 244 60.7
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 4.2e-75 285.8 315 52.7
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 2.1e-74 283.5 235 59.1
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 2.3e-73 280.0 243 61.3
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.3e-71 274.2 253 58.9
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 2.1e-71 273.5 212 67.0
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 6.2e-71 271.9 242 60.3
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 8.1e-71 271.6 254 58.3
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 3.1e-70 269.6 240 55.0
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 2.0e-69 266.9 186 70.4
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 4.5e-69 265.8 242 59.1
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 9.9e-69 264.6 193 67.4
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.3e-68 264.2 244 57.0
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 2.1e-66 256.9 247 56.7
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 2.7e-66 256.5 237 54.4
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 4.6e-66 255.8 228 54.8
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.5e-61 240.7 194 63.4
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 1.9e-56 223.8 163 66.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.6e-55 220.7 157 69.4
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 2.6e-53 213.4 185 53.5
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 7.6e-53 211.8 220 50.0
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.7e-52 210.7 139 75.5
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 3.2e-51 206.5 233 43.8
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 1.9e-48 197.2 136 69.9
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 2.5e-40 170.2 131 61.8
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 1.6e-34 151.0 224 39.3
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 2.0e-29 134.0 205 37.1
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 4.8e-23 112.8 82 67.1
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 1.1e-22 111.7 90 63.3
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 1.1e-22 111.7 90 63.3
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 2.0e-21 107.5 79 67.1
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.7e-20 104.4 82 62.2
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 4.1e-14 83.2 65 66.2
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 5.0e-12 76.3 83 50.6
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 1.4e-06 58.2 47 59.6
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 4.1e-06 56.6 46 58.7


User provided reference genes

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