Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 1.6e-52 209.1 104 100.0
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 1.6e-20 102.8 54 87.0
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 3.7e-17 91.7 54 79.6
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 8.8e-11 70.5 54 64.8
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 5.7e-10 67.8 54 61.1
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 3.7e-09 65.1 54 57.4
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 6.3e-09 64.3 52 59.6
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.1e-08 63.5 59 54.2
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.4e-08 63.2 52 59.6
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.8e-08 62.8 48 64.6
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.8e-08 62.8 48 60.4
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 2.4e-08 62.4 48 60.4
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 2.4e-08 62.4 48 60.4
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.4e-08 62.4 48 66.7
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.1e-08 62.0 64 50.0
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 3.1e-08 62.0 54 53.7
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 5.3e-08 61.2 48 64.6
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 5.3e-08 61.2 46 67.4
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 6.9e-08 60.8 43 65.1
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 6.9e-08 60.8 43 65.1
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 6.9e-08 60.8 43 65.1
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 6.9e-08 60.8 43 65.1
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 9.1e-08 60.5 48 64.6
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.5e-07 59.7 54 55.6
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.5e-07 59.7 48 62.5
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 1.5e-07 59.7 48 62.5
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.5e-07 59.7 48 62.5
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 1.5e-07 59.7 48 62.5
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.5e-07 59.7 54 55.6
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 2.0e-07 59.3 43 62.8
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 2.0e-07 59.3 43 62.8
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 2.0e-07 59.3 43 62.8
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 2.0e-07 59.3 43 62.8
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 2.0e-07 59.3 43 62.8
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 2.0e-07 59.3 43 62.8
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 2.6e-07 58.9 54 53.7
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.6e-07 58.9 51 52.9
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.4e-07 58.5 52 51.9
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 4.5e-07 58.2 54 53.7
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 4.5e-07 58.2 54 53.7
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 5.9e-07 57.8 49 57.1
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 5.9e-07 57.8 43 60.5
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 7.7e-07 57.4 43 60.5
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 7.7e-07 57.4 43 60.5
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 7.7e-07 57.4 54 53.7
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.0e-06 57.0 54 55.6
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 1.0e-06 57.0 54 51.9
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 1.0e-06 57.0 47 61.7
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.7e-06 56.2 43 58.1
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.2e-06 55.8 62 45.2
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 2.2e-06 55.8 54 48.1
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.9e-06 55.5 48 58.3
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.9e-06 55.5 43 58.1
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 2.9e-06 55.5 43 65.1
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 3.8e-06 55.1 54 48.1
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 3.8e-06 55.1 53 47.2
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 5.0e-06 54.7 54 50.0
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 5.0e-06 54.7 54 53.7
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 6.5e-06 54.3 43 53.5
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 6.5e-06 54.3 43 55.8
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 6.5e-06 54.3 52 50.0
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 8.5e-06 53.9 48 52.1
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 8.5e-06 53.9 48 52.1
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 8.5e-06 53.9 43 55.8
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 8.5e-06 53.9 41 65.9


User provided reference genes

Program Settings