Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 2.9e-80 302.0 168 100.0
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 8.7e-61 237.3 175 74.9
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 1.9e-60 236.1 176 74.4
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 5.0e-48 194.9 165 63.6
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 2.7e-33 146.0 158 46.2
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 1.1e-31 140.6 158 43.0
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 4.2e-31 138.7 162 42.6
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 5.5e-31 138.3 160 45.0
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 2.7e-30 136.0 160 44.4
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 8.0e-30 134.4 158 44.3
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 1.5e-28 130.2 161 44.7
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 2.0e-28 129.8 158 43.7
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 3.4e-28 129.0 160 41.2
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 4.4e-28 128.6 159 41.5
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 4.4e-28 128.6 158 41.1
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 7.5e-28 127.9 158 40.5
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 7.5e-28 127.9 161 41.0
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 1.3e-27 127.1 159 42.1
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 1.7e-27 126.7 162 40.1
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 2.8e-27 125.9 161 39.8
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.8e-27 125.9 160 39.4
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.8e-27 125.9 161 42.2
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 3.7e-27 125.6 158 44.3
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 4.8e-27 125.2 162 41.4
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 6.3e-27 124.8 161 42.2
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.1e-26 124.0 159 42.8
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.8e-26 123.2 159 42.8
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 2.4e-26 122.9 162 42.0
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.4e-26 122.9 160 43.8
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 3.1e-26 122.5 158 39.9
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 3.1e-26 122.5 158 39.2
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 3.1e-26 122.5 158 39.2
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.1e-26 122.1 160 43.8
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 4.1e-26 122.1 158 39.2
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 7.0e-26 121.3 158 38.6
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.0e-26 121.3 159 41.5
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 7.0e-26 121.3 160 42.5
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.2e-25 120.6 158 38.6
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 1.6e-25 120.2 164 41.5
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 1.6e-25 120.2 159 44.0
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.0e-25 119.8 119 49.6
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 2.0e-25 119.8 159 39.0
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 2.7e-25 119.4 159 42.8
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 4.5e-25 118.6 158 41.8
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 4.5e-25 118.6 163 40.5
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 5.9e-25 118.2 159 42.1
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.9e-25 118.2 154 40.9
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 5.9e-25 118.2 160 40.6
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 5.9e-25 118.2 161 41.6
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 5.9e-25 118.2 161 41.6
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.7e-25 117.9 160 42.5
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.7e-25 117.9 158 38.0
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.3e-24 117.1 159 38.4
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.7e-24 116.7 159 40.9
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 2.2e-24 116.3 161 39.8
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 2.9e-24 115.9 158 40.5
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.8e-24 115.5 160 38.8
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 5.0e-24 115.2 161 41.6
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 6.5e-24 114.8 162 42.6
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 8.5e-24 114.4 162 45.1
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.1e-23 114.0 159 42.8
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 2.5e-23 112.8 165 40.6
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 3.2e-23 112.5 162 39.5
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 5.5e-23 111.7 161 38.5
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 7.2e-23 111.3 158 38.6
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 2.7e-22 109.4 159 34.6
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 3.6e-22 109.0 174 39.7
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 4.7e-22 108.6 162 38.9
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 6.1e-22 108.2 130 44.6
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.8e-21 106.7 166 38.0
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 3.0e-21 105.9 163 37.4
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.2e-20 104.0 155 38.7
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 1.2e-20 104.0 182 37.4
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.0e-20 103.2 158 35.4
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 4.4e-20 102.1 159 37.1
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 5.7e-20 101.7 162 35.2
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 5.7e-20 101.7 175 35.4
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 7.5e-20 101.3 159 36.5
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 7.5e-20 101.3 153 37.3
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 7.5e-20 101.3 153 37.3
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 1.3e-19 100.5 159 36.5
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 4.9e-19 98.6 160 34.4
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 4.9e-19 98.6 179 31.3
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 4.9e-19 98.6 160 35.6
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 6.3e-19 98.2 162 37.7
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 6.3e-19 98.2 185 36.8
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 8.3e-19 97.8 159 37.1
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 1.8e-18 96.7 189 40.7
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 4.1e-18 95.5 166 33.7
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 9.2e-18 94.4 171 33.3
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 1.6e-17 93.6 184 30.4
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 1.6e-17 93.6 177 32.2
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 2.0e-17 93.2 183 34.4
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 2.7e-17 92.8 182 32.4
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 2.7e-17 92.8 170 33.5
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 2.7e-17 92.8 149 39.6
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 4.5e-17 92.0 171 32.2
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 4.5e-17 92.0 170 32.9
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 4.5e-17 92.0 197 32.5
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 7.7e-17 91.3 163 36.8
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 1.3e-16 90.5 176 31.2
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 1.7e-16 90.1 188 30.9
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 2.9e-16 89.4 179 29.6
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 2.9e-16 89.4 187 32.1
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 2.9e-16 89.4 187 32.1
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 6.6e-16 88.2 180 33.3
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 6.6e-16 88.2 177 32.2
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 8.6e-16 87.8 182 29.1
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 8.6e-16 87.8 179 31.8
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 8.6e-16 87.8 176 31.2
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 8.6e-16 87.8 179 31.8
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 1.5e-15 87.0 179 30.7
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.5e-15 87.0 178 31.5
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 1.9e-15 86.7 164 34.1
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 3.3e-15 85.9 183 31.1
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 3.3e-15 85.9 163 33.1
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 5.6e-15 85.1 184 32.1
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 1.2e-14 84.0 179 31.3
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 1.6e-14 83.6 196 33.7
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 2.1e-14 83.2 176 33.0
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 3.6e-14 82.4 187 35.8
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 3.6e-14 82.4 187 35.8
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 3.6e-14 82.4 178 33.1
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 4.7e-14 82.0 184 30.4
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 1.8e-13 80.1 116 42.2
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 5.2e-13 78.6 101 41.6
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 6.8e-13 78.2 163 31.3
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 3.4e-12 75.9 147 34.0
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 3.4e-12 75.9 157 31.2
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 4.4e-12 75.5 140 32.9
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.4e-12 75.5 170 31.2
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.7e-12 75.1 168 29.8
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 7.5e-12 74.7 153 39.2
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 7.5e-12 74.7 126 37.3
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 9.8e-12 74.3 119 33.6
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 1.3e-11 73.9 168 31.0
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 2.2e-11 73.2 131 33.6
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 2.2e-11 73.2 131 33.6
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 2.2e-11 73.2 173 31.8
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 6.4e-11 71.6 153 30.1
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 1.1e-10 70.9 154 31.2
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 1.1e-10 70.9 163 30.7
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.8e-10 70.1 158 30.4
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 3.2e-10 69.3 172 30.2
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 3.2e-10 69.3 177 30.5
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 7.0e-10 68.2 150 30.7
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 1.2e-09 67.4 150 32.7
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 1.6e-09 67.0 162 28.4
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 2.7e-09 66.2 150 29.3
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 4.6e-09 65.5 159 30.8
PSO478G4153 Papaver somniferum HOM05D002916 ORTHO05D003152 5.9e-09 65.1 153 28.8
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 7.8e-09 64.7 151 29.8
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.0e-08 64.3 156 27.6
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 1.0e-08 64.3 171 25.7
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 1.3e-08 63.9 152 27.0
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 1.3e-08 63.9 149 30.2
COL.COLO4_14359 Corchorus olitorius HOM05D002916 ORTHO05D003152 2.3e-08 63.2 179 29.1
Manes.01G042300 Manihot esculenta HOM05D002916 ORTHO05D003152 2.3e-08 63.2 152 30.9
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 3.0e-08 62.8 155 28.4
PSO266G0041 Papaver somniferum HOM05D002916 ORTHO05D003152 3.0e-08 62.8 153 31.4
SEGI_19965 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 3.0e-08 62.8 170 28.8
Ca_16766_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 3.9e-08 62.4 177 26.0
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 3.9e-08 62.4 174 27.6
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 6.6e-08 61.6 175 33.1
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 8.6e-08 61.2 166 28.3
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 1.1e-07 60.8 155 29.7
CsaV3_5G000050 Cucumis sativus L. HOM05D002916 ORTHO05D003152 1.5e-07 60.5 151 29.1
Potri.015G005700 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.5e-07 60.5 152 35.5
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 2.5e-07 59.7 154 27.9
TPR.G36204 Trifolium pratense HOM05D002916 ORTHO05D003152 2.5e-07 59.7 164 28.7
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 2.5e-07 59.7 174 25.9
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 3.3e-07 59.3 152 28.3
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 3.3e-07 59.3 185 28.6
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 4.3e-07 58.9 173 28.9
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 4.3e-07 58.9 165 33.3
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 4.3e-07 58.9 159 31.4
Nn3g18859 Nelumbo nucifera HOM05D002916 ORTHO05D003152 7.3e-07 58.2 155 29.7
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 9.5e-07 57.8 172 26.2
MELO3C005922.2 Cucumis melo HOM05D002916 ORTHO05D003152 1.2e-06 57.4 154 27.3
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 2.1e-06 56.6 152 30.9
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 4.7e-06 55.5 149 26.8
Sp2g00030 Schrenkiella parvula HOM05D002255 ORTHO05D002288 6.2e-06 55.1 86 37.2


User provided reference genes

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