Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G009300 Citrullus lanatus HOM05D006702 ORTHO05D008540 7.7e-112 407.1 203 100.0
MELO3C024465.2 Cucumis melo HOM05D006702 ORTHO05D008540 6.8e-100 367.5 203 90.1
CsaV3_6G039890 Cucumis sativus L. HOM05D006702 ORTHO05D008540 1.5e-94 349.7 203 85.2
Sed0024166 Sechium edule HOM05D006702 ORTHO05D008540 1.6e-61 240.0 199 65.8
QL07p043331 Quercus lobata HOM05D006702 ORTHO05D008540 2.2e-50 203.0 186 59.7
Haze_20544 Corylus avellana HOM05D006702 ORTHO05D008540 3.8e-50 202.2 196 57.7
CiPaw.10G130200 Carya illinoinensis HOM05D006702 ORTHO05D008540 4.9e-50 201.8 157 66.2
Haze_20547 Corylus avellana HOM05D006702 ORTHO05D008540 6.4e-50 201.4 185 60.0
QL07p043496 Quercus lobata HOM05D006702 ORTHO05D008540 1.9e-49 199.9 186 59.7
CiPaw.10G130000 Carya illinoinensis HOM05D006702 ORTHO05D008540 4.2e-49 198.7 153 66.0
Gorai.009G414600 Gossypium raimondii HOM05D006702 ORTHO05D008540 1.0e-47 194.1 204 56.4
Gohir.A04G072000 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.1e-46 190.7 204 55.9
CANSAT80G0135 Cannabis sativa HOM05D006702 ORTHO05D008540 3.3e-46 189.1 192 56.2
Prupe.6G232200 Prunus persica HOM05D006702 ORTHO05D008540 4.3e-46 188.7 210 51.9
Duzib106G0264 Durio zibethinus HOM05D006702 ORTHO05D008540 5.6e-46 188.3 161 64.6
FvH4_6g16390 Fragaria vesca HOM05D006702 ORTHO05D008540 1.3e-45 187.2 133 70.7
FAN14G1896 Fragaria x ananassa HOM05D006702 ORTHO05D008540 1.3e-45 187.2 133 70.7
FAN05G3937 Fragaria x ananassa HOM05D006702 ORTHO05D008540 8.1e-45 184.5 152 63.8
RcHm_v2.0_Chr3g0470251 Rosa chinensis HOM05D006702 ORTHO05D008540 1.4e-44 183.7 181 59.1
TWI77G0937 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 2.4e-44 183.0 200 53.0
Potri.016G093000 Populus trichocarpa HOM05D006702 ORTHO05D008540 5.3e-44 181.8 219 50.2
Nitab4.5_0008928g0010 Nicotiana tabacum HOM05D006702 ORTHO05D008540 6.9e-44 181.4 142 67.6
Nitab4.5_0000578g0200 Nicotiana tabacum HOM05D006702 ORTHO05D008540 2.6e-43 179.5 157 61.8
Thecc.05G066700 Theobroma cacao HOM05D006702 ORTHO05D008540 4.5e-43 178.7 150 63.3
Gorai.006G163300 Gossypium raimondii HOM05D006702 ORTHO05D008540 1.3e-42 177.2 150 62.7
THA.LOC104823233 Tarenaya hassleriana HOM05D006702 ORTHO05D008540 1.7e-42 176.8 162 63.0
MD04G1093600 Malus domestica HOM05D006702 ORTHO05D008540 2.2e-42 176.4 212 50.0
Cc06_g04220 Coffea canephora HOM05D006702 ORTHO05D008540 4.9e-42 175.3 142 64.8
CSS0007009 Camellia sinensis var. sinensis HOM05D006702 ORTHO05D008540 1.1e-41 174.1 208 52.4
Gohir.D04G110501 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.9e-41 173.3 95 84.2
PGR142G4417 Punica granatum HOM05D006702 ORTHO05D008540 1.9e-41 173.3 172 55.2
Gohir.A09G146600 Gossypium hirsutum HOM05D006702 ORTHO05D008540 3.2e-41 172.6 141 63.8
Gohir.D09G142300 Gossypium hirsutum HOM05D006702 ORTHO05D008540 4.2e-41 172.2 202 52.0
MSTRG.10321 Avicennia marina HOM05D006702 ORTHO05D008540 7.1e-41 171.4 161 59.0
GSVIVG01025733001 Vitis vinifera HOM05D006702 ORTHO05D008540 7.1e-41 171.4 101 78.2
Manes.09G067614 Manihot esculenta HOM05D006702 ORTHO05D008540 9.3e-41 171.0 184 53.8
Lj5g0016847 Lotus japonicus HOM05D006702 ORTHO05D008540 2.1e-40 169.9 165 56.4
CAN.G900.34 Capsicum annuum HOM05D006702 ORTHO05D008540 3.5e-40 169.1 142 61.3
Duzib128G1950 Durio zibethinus HOM05D006702 ORTHO05D008540 7.9e-40 167.9 88 88.6
Eucgr.K02933 Eucalyptus grandis HOM05D006702 ORTHO05D008540 7.9e-40 167.9 210 50.5
Lalb_Chr06g0171741 Lupinus albus HOM05D006702 ORTHO05D008540 1.8e-39 166.8 129 67.4
Actinidia32493 Actinidia chinensis HOM05D006702 ORTHO05D008540 2.3e-39 166.4 140 62.9
Oeu045060.1 Olea europaea HOM05D006702 ORTHO05D008540 3.9e-39 165.6 158 58.9
Carub.0006s0219 Capsella rubella HOM05D006702 ORTHO05D008540 1.1e-38 164.1 139 63.3
Ciclev10012549m.g Citrus clementina HOM05D006702 ORTHO05D008540 1.1e-38 164.1 133 65.4
Atru.chr8.1809 Acer truncatum HOM05D006702 ORTHO05D008540 1.5e-38 163.7 146 62.3
Migut.L01703 Erythranthe guttata HOM05D006702 ORTHO05D008540 1.5e-38 163.7 140 64.3
Sp6g39370 Schrenkiella parvula HOM05D006702 ORTHO05D008540 3.3e-38 162.5 138 65.2
Cpa.g.sc54.80 Carica papaya HOM05D006702 ORTHO05D008540 4.3e-38 162.2 155 57.4
C03p01460 Brassica napus HOM05D006702 ORTHO05D008540 5.6e-38 161.8 154 58.4
Phvul.007G219250 Phaseolus vulgaris HOM05D006702 ORTHO05D008540 5.6e-38 161.8 120 67.5
BcaB01g05844 Brassica carinata HOM05D006702 ORTHO05D008540 7.4e-38 161.4 154 59.1
BolC3t12702H Brassica oleracea HOM05D006702 ORTHO05D008540 7.4e-38 161.4 154 59.1
Sopen09g002990 Solanum pennellii HOM05D006702 ORTHO05D008540 7.4e-38 161.4 174 54.6
ECA233G1636 Erigeron canadensis HOM05D006702 ORTHO05D008540 9.6e-38 161.0 110 71.8
PGSC0003DMG400003886 Solanum tuberosum HOM05D006702 ORTHO05D008540 2.1e-37 159.8 114 70.2
Sc02g0001610 Simmondsia chinensis HOM05D006702 ORTHO05D008540 2.8e-37 159.5 124 63.7
VMungo0720G0934 Vigna mungo HOM05D006702 ORTHO05D008540 2.8e-37 159.5 93 79.6
Aa31LG1G21770 Aethionema arabicum HOM05D006702 ORTHO05D008540 4.8e-37 158.7 109 68.8
AT5G03370 Arabidopsis thaliana HOM05D006702 ORTHO05D008540 4.8e-37 158.7 144 61.1
Nn2g13794 Nelumbo nucifera HOM05D006702 ORTHO05D008540 4.8e-37 158.7 159 56.0
Nn2g13797 Nelumbo nucifera HOM05D006702 ORTHO05D008540 4.8e-37 158.7 159 56.0
BraA03t09496Z Brassica rapa HOM05D006702 ORTHO05D008540 8.1e-37 157.9 140 62.1
TWI53G0904 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 1.1e-36 157.5 101 71.3
AL6G12700 Arabidopsis lyrata HOM05D006702 ORTHO05D008540 1.4e-36 157.1 130 62.3
Solyc09g008190.3 Solanum lycopersicum HOM05D006702 ORTHO05D008540 1.8e-36 156.8 211 47.9
A03p01140 Brassica napus HOM05D000070 ORTHO05D001255 3.1e-36 156.0 155 58.7
SGA_v2.0_scaffold224G42945 Striga asiatica HOM05D006702 ORTHO05D008540 5.3e-36 155.2 157 58.0
TPR.G11275 Trifolium pratense HOM05D006702 ORTHO05D008540 6.9e-36 154.8 127 61.4
Medtr1g063240 Medicago truncatula HOM05D006702 ORTHO05D008540 1.2e-35 154.1 120 65.0
Sabra16G0098200 Salix brachista HOM05D006702 ORTHO05D008540 1.5e-35 153.7 126 64.3
Glyma.13G142500 Glycine max HOM05D006702 ORTHO05D008540 2.6e-35 152.9 101 76.2
TAR369G0293 Trochodendron aralioides HOM05D006702 ORTHO05D008540 4.5e-35 152.1 89 82.0
PSO339G3061 Papaver somniferum HOM05D006702 ORTHO05D008540 5.8e-35 151.8 153 54.9
CiPaw.09G172500 Carya illinoinensis HOM05D006702 ORTHO05D008540 1.3e-34 150.6 98 74.5
Lj2P122T8 Lonicera japonica HOM05D006702 ORTHO05D008540 1.3e-34 150.6 87 82.8
Psat6g074160 Pisum sativum HOM05D006702 ORTHO05D008540 2.2e-34 149.8 132 61.4
ATR0171G014 Amborella trichopoda HOM05D006702 ORTHO05D008540 3.8e-34 149.1 87 79.3
Aqoxy2G01772 Aquilegia oxysepala HOM05D006702 ORTHO05D008540 4.9e-34 148.7 82 84.1
EL10Ac7g16628 Beta vulgaris HOM05D006702 ORTHO05D008540 8.4e-34 147.9 90 75.6
CARHR209960 Cardamine hirsuta HOM05D006702 ORTHO05D008540 3.2e-33 146.0 149 58.4
AUR62040349 Chenopodium quinoa HOM05D006702 ORTHO05D008540 3.2e-33 146.0 87 78.2
Thhalv10003274m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 3.2e-33 146.0 200 50.0
Ca_11502_v3 Cicer arietinum L. HOM05D006702 ORTHO05D008540 4.2e-33 145.6 122 61.5
CDE05G1201 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 9.3e-33 144.4 96 74.0
Thhalv10014711m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 1.2e-32 144.1 93 72.0
AUR62042500 Chenopodium quinoa HOM05D006702 ORTHO05D008540 2.7e-32 142.9 104 68.3
Thhalv10029095m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 4.6e-32 142.1 83 77.1
Lalb_Chr24g0398871 Lupinus albus HOM05D006702 ORTHO05D008540 1.0e-31 141.0 100 68.0
DCAR_020817 Daucus carota HOM05D006702 ORTHO05D008540 6.7e-31 138.3 89 71.9
Hma1.2p1_0205F.1_g087030 Hydrangea macrophylla HOM05D006702 ORTHO05D008540 8.7e-31 137.9 75 85.3
Lsat_1_v5_gn_6_25081 Lactuca sativa HOM05D006702 ORTHO05D008540 1.9e-30 136.7 136 55.1
DCAR_014995 Daucus carota HOM05D006702 ORTHO05D008540 1.8e-28 130.2 93 67.7
CARHR118060 Cardamine hirsuta HOM05D006702 ORTHO05D008540 6.9e-28 128.3 83 69.9
Nitab4.5_0008928g0020 Nicotiana tabacum HOM05D006702 ORTHO05D008540 2.6e-27 126.3 85 70.6
Hund25533 Selenicereus undatus HOM05D006702 ORTHO05D008540 3.4e-27 125.9 134 55.2
CAN.G900.33 Capsicum annuum HOM05D006702 ORTHO05D008540 4.5e-27 125.6 85 70.6
Peaxi162Scf01139g00005 Petunia axillaris HOM05D006702 ORTHO05D008540 5.9e-27 125.2 88 67.0
arahy.Tifrunner.gnm1.ann1.C2LQEN Arachis hypogaea HOM05D006702 ORTHO05D008540 2.2e-26 123.2 75 78.7
arahy.Tifrunner.gnm1.ann1.NQ6TBI Arachis hypogaea HOM05D006702 ORTHO05D008540 2.2e-26 123.2 75 78.7
Potri.006G124966 Populus trichocarpa HOM05D006702 ORTHO05D008540 1.9e-25 120.2 108 58.3
SEGI_37807 Sequoiadendron giganteum HOM05D006702 ORTHO05D008540 3.2e-25 119.4 89 64.0
Zm00001eb380050 Zea mays HOM05D006702 ORTHO05D008540 4.2e-25 119.0 116 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2290 Anthoceros agrestis HOM05D006702 ORTHO05D008540 1.8e-23 113.6 89 60.7
Mapoly0013s0202 Marchantia polymorpha HOM05D006702 ORTHO05D008540 3.9e-23 112.5 110 50.0
unitig_0.g683 Utricularia gibba HOM05D006702 ORTHO05D008540 3.9e-23 112.5 110 58.2
Os06g0264700 Oryza sativa ssp. japonica HOM05D006702 ORTHO05D008540 7.4e-22 108.2 112 56.2
AagrBONN_evm.TU.Sc2ySwM_362.139 Anthoceros agrestis HOM05D006702 ORTHO05D008540 6.3e-21 105.1 89 53.9
SMO137G0384 Selaginella moellendorffii HOM05D006702 ORTHO05D008540 8.2e-21 104.8 89 55.1
Zm00001eb380040 Zea mays HOM05D006702 ORTHO05D008540 3.1e-20 102.8 111 55.0
Pp3c18_4750 Physcomitrium patens HOM05D006702 ORTHO05D008540 5.3e-20 102.1 89 55.1
Pp3c1_15300 Physcomitrium patens HOM05D006702 ORTHO05D008540 4.5e-19 99.0 97 46.4
FAN02G1423 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.3e-15 86.7 94 54.3
FAN05G1090 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.3e-15 86.7 94 54.3
Pp3c5_16270 Physcomitrium patens HOM05D006702 ORTHO05D008540 1.7e-13 80.5 96 39.6
MSTRG.19178 Avicennia marina HOM05D006702 ORTHO05D008540 3.7e-13 79.3 140 40.7
CDE05G1088 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 2.6e-11 73.2 41 82.9
Sabra06G0098700 Salix brachista HOM05D000002 ORTHO05D000047 3.2e-09 66.2 55 63.6
VMungo1215G2316 Vigna mungo HOM05D017790 ORTHO05D002759 5.7e-06 55.5 39 61.5


User provided reference genes

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