Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 3.0e-257 891.3 447 100.0
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 6.8e-153 544.7 298 91.3
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 6.7e-116 421.8 227 91.6
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 2.2e-103 380.2 231 84.4
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 2.8e-90 336.7 215 79.1
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 3.4e-88 329.7 227 74.0
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 1.3e-87 327.8 200 82.0
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 1.1e-86 324.7 201 80.6
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 1.1e-86 324.7 228 74.6
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 1.9e-86 323.9 216 77.8
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 1.9e-86 323.9 227 73.1
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 2.5e-86 323.6 222 75.2
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 2.5e-86 323.6 222 75.2
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 5.5e-86 322.4 211 77.3
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 7.2e-86 322.0 215 77.2
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 7.2e-86 322.0 229 72.1
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 1.6e-85 320.9 227 74.9
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 1.6e-85 320.9 175 85.7
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 4.7e-85 319.3 227 72.7
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 7.9e-85 318.5 214 75.7
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 7.9e-85 318.5 238 70.6
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 7.9e-85 318.5 228 73.2
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 1.0e-84 318.2 231 71.4
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 2.3e-84 317.0 219 74.4
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 2.3e-84 317.0 221 74.7
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 3.0e-84 316.6 242 69.0
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 3.9e-84 316.2 206 78.2
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 5.1e-84 315.8 215 75.8
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 5.1e-84 315.8 222 74.3
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 6.7e-84 315.5 233 70.8
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 6.7e-84 315.5 231 71.4
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 6.7e-84 315.5 222 74.8
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 8.8e-84 315.1 227 69.2
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 1.1e-83 314.7 215 75.8
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 1.5e-83 314.3 210 76.2
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 1.5e-83 314.3 220 75.9
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 2.0e-83 313.9 242 69.0
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 2.6e-83 313.5 187 82.4
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 3.3e-83 313.2 204 77.5
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 4.4e-83 312.8 188 79.3
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 4.4e-83 312.8 231 71.0
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 5.7e-83 312.4 233 70.8
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 7.4e-83 312.0 215 74.9
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 7.4e-83 312.0 222 73.4
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 1.3e-82 311.2 213 73.2
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 3.7e-82 309.7 212 73.1
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 8.2e-82 308.5 175 85.1
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 1.1e-81 308.1 249 67.5
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 1.8e-81 307.4 223 70.9
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 2.4e-81 307.0 172 86.6
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 2.4e-81 307.0 172 86.6
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 2.4e-81 307.0 224 71.4
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 4.1e-81 306.2 188 79.3
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 7.0e-81 305.4 216 73.1
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 9.1e-81 305.1 236 69.9
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.2e-80 304.7 231 70.6
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 1.2e-80 304.7 228 70.6
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 4.5e-80 302.8 174 82.8
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 4.5e-80 302.8 193 79.3
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 5.9e-80 302.4 266 64.7
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 5.9e-80 302.4 238 69.7
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 1.0e-79 301.6 241 67.2
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 2.2e-79 300.4 250 64.4
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 8.5e-79 298.5 215 71.6
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 1.5e-78 297.7 175 80.0
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 1.5e-78 297.7 226 67.3
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 1.5e-78 297.7 237 67.1
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 3.2e-78 296.6 217 72.8
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 3.2e-78 296.6 154 91.6
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 5.5e-78 295.8 216 69.4
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 7.2e-78 295.4 174 82.2
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 9.4e-78 295.0 229 68.6
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 1.2e-77 294.7 227 69.2
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 1.6e-77 294.3 247 64.8
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 4.7e-77 292.7 218 67.4
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 6.1e-77 292.4 153 90.8
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 8.0e-77 292.0 223 66.8
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 8.0e-77 292.0 200 70.0
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 1.0e-76 291.6 209 72.2
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 1.8e-76 290.8 227 69.2
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 3.9e-76 289.7 321 52.6
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 5.2e-76 289.3 253 64.4
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 7.4e-75 285.4 201 70.6
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 1.3e-74 284.6 172 77.3
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 1.7e-74 284.3 165 84.2
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 2.2e-74 283.9 158 84.2
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 1.4e-73 281.2 168 78.6
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 2.4e-73 280.4 154 86.4
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 4.1e-73 279.6 211 68.2
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 6.5e-71 272.3 166 76.5
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 1.4e-68 264.6 198 70.2
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 2.6e-67 260.4 235 59.6
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 3.7e-66 256.5 180 69.4
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 3.1e-65 253.4 171 71.3
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 1.7e-63 247.7 146 78.1
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 4.8e-58 229.6 158 71.5
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 1.1e-57 228.4 118 89.8
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 3.5e-56 223.4 188 56.4
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 6.6e-55 219.2 227 52.0
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 1.9e-54 217.6 120 81.7
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 2.8e-50 203.8 120 77.5
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 2.0e-48 197.6 183 54.6
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 5.0e-47 193.0 174 56.9
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 4.7e-45 186.4 201 53.7
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 1.7e-42 177.9 118 70.3
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 1.4e-41 174.9 115 76.5
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 1.4e-41 174.9 115 76.5
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 7.0e-41 172.6 94 86.2
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 2.0e-27 127.9 90 74.4
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.3e-26 125.2 66 86.4
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 8.6e-23 112.5 68 79.4
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 5.2e-20 103.2 168 38.1
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 8.9e-20 102.4 116 55.2
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 2.4e-17 94.4 126 34.9
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 3.9e-15 87.0 62 69.4
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 5.1e-15 86.7 47 85.1
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 9.6e-14 82.4 129 33.3
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.3e-10 72.0 134 44.8
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 3.5e-08 63.9 164 26.8
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 3.9e-07 60.5 123 27.6


User provided reference genes

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