Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G008950 Citrullus lanatus HOM05D000860 ORTHO05D005731 4.1e-139 498.0 250 100.0
CsaV3_6G039460 Cucumis sativus L. HOM05D000860 ORTHO05D005731 6.4e-116 421.0 255 83.9
MELO3C014247.2 Cucumis melo HOM05D000860 ORTHO05D005731 2.3e-113 412.5 257 82.5
Sed0008091 Sechium edule HOM05D000860 ORTHO05D005731 8.6e-89 330.9 259 66.8
ClCG10G020360 Citrullus lanatus HOM05D000860 ORTHO05D005731 4.3e-48 195.7 245 48.2
Cfa017540 Carpinus fangiana HOM05D000860 ORTHO05D005731 7.4e-48 194.9 265 47.9
Sed0021746 Sechium edule HOM05D000860 ORTHO05D005731 1.1e-46 191.0 233 48.1
Prupe.6G237600 Prunus persica HOM05D000860 ORTHO05D005731 3.1e-46 189.5 264 45.5
Haze_20609 Corylus avellana HOM05D000860 ORTHO05D005731 5.3e-46 188.7 265 46.8
CsaV3_3G035740 Cucumis sativus L. HOM05D000860 ORTHO05D005731 1.2e-45 187.6 249 46.2
MELO3C009334.2 Cucumis melo HOM05D000860 ORTHO05D005731 1.5e-45 187.2 245 45.7
QL07p044635 Quercus lobata HOM05D000860 ORTHO05D005731 1.7e-44 183.7 266 45.9
CiPaw.10G134300 Carya illinoinensis HOM05D000860 ORTHO05D005731 2.9e-44 183.0 265 45.3
MD04G1099200 Malus domestica HOM05D000860 ORTHO05D005731 3.6e-42 176.0 265 44.5
MD12G1119800 Malus domestica HOM05D000860 ORTHO05D005731 6.1e-42 175.3 264 44.7
FAN02G4050 Fragaria x ananassa HOM05D000860 ORTHO05D005731 1.4e-41 174.1 262 43.5
FAN05G3398 Fragaria x ananassa HOM05D000860 ORTHO05D005731 2.3e-41 173.3 262 43.1
RcHm_v2.0_Chr3g0469451 Rosa chinensis HOM05D000860 ORTHO05D005731 3.0e-41 172.9 263 42.6
FAN09G1893 Fragaria x ananassa HOM05D000860 ORTHO05D005731 3.9e-41 172.6 262 43.1
FAN14G4874 Fragaria x ananassa HOM05D000860 ORTHO05D005731 3.9e-41 172.6 262 43.1
FvH4_6g15740 Fragaria vesca HOM05D000860 ORTHO05D005731 5.1e-41 172.2 262 43.1
FAN14G5122 Fragaria x ananassa HOM05D000860 ORTHO05D005731 6.7e-41 171.8 262 43.1
COL.COLO4_27038 Corchorus olitorius HOM05D000860 ORTHO05D005731 3.3e-40 169.5 261 44.4
Duzib093G2042 Durio zibethinus HOM05D000860 ORTHO05D005731 9.7e-40 167.9 259 43.6
Lalb_Chr01g0018861 Lupinus albus HOM05D000860 ORTHO05D005731 8.2e-39 164.9 251 41.4
Ciclev10011672m.g Citrus clementina HOM05D000860 ORTHO05D005731 3.1e-38 162.9 260 41.9
CANSAT80G1090 Cannabis sativa HOM05D000860 ORTHO05D005731 4.1e-38 162.5 265 40.4
Duzib128G0216 Durio zibethinus HOM05D000860 ORTHO05D005731 5.3e-38 162.2 261 42.9
Thecc.05G057900 Theobroma cacao HOM05D000860 ORTHO05D005731 5.3e-38 162.2 261 43.3
CiPaw.09G177100 Carya illinoinensis HOM05D000860 ORTHO05D005731 2.9e-36 156.4 194 48.5
Manes.08G006300 Manihot esculenta HOM05D000860 ORTHO05D005731 3.2e-35 152.9 259 39.8
Glyma.10G051900 Glycine max HOM05D000860 ORTHO05D005731 1.2e-34 151.0 257 40.1
Eucgr.A01156 Eucalyptus grandis HOM05D000860 ORTHO05D005731 2.1e-34 150.2 273 40.3
Atru.chr8.1875 Acer truncatum HOM05D000860 ORTHO05D005731 1.8e-33 147.1 256 40.6
TWI74G0048 Tripterygium wilfordii HOM05D000860 ORTHO05D005731 2.3e-33 146.7 246 40.7
arahy.Tifrunner.gnm1.ann1.7R2GAN Arachis hypogaea HOM05D000860 ORTHO05D005731 1.5e-32 144.1 246 39.0
arahy.Tifrunner.gnm1.ann1.AHVV25 Arachis hypogaea HOM05D000860 ORTHO05D005731 1.5e-32 144.1 267 37.5
Lalb_Chr06g0171491 Lupinus albus HOM05D000860 ORTHO05D005731 3.3e-32 142.9 255 38.4
Potri.006G128800 Populus trichocarpa HOM05D000860 ORTHO05D005731 7.4e-32 141.7 261 40.2
TPR.G21211 Trifolium pratense HOM05D000860 ORTHO05D005731 7.4e-32 141.7 253 37.9
Lj5g0023643 Lotus japonicus HOM05D000860 ORTHO05D005731 3.7e-31 139.4 250 39.2
Lj1g0015108 Lotus japonicus HOM05D000860 ORTHO05D005731 8.2e-31 138.3 241 40.7
TWI53G0334 Tripterygium wilfordii HOM05D000860 ORTHO05D005731 8.2e-31 138.3 246 40.2
Gorai.013G027100 Gossypium raimondii HOM05D000860 ORTHO05D005731 1.4e-30 137.5 232 39.2
Sabra06G0101400 Salix brachista HOM05D000860 ORTHO05D005731 1.4e-30 137.5 261 39.1
TAR623G0466 Trochodendron aralioides HOM05D000860 ORTHO05D005731 2.4e-30 136.7 248 39.1
Gohir.A13G025400 Gossypium hirsutum HOM05D000860 ORTHO05D005731 3.1e-30 136.3 232 39.2
Medtr7g101130 Medicago truncatula HOM05D000860 ORTHO05D005731 3.1e-30 136.3 247 41.3
VMungo0720G0157 Vigna mungo HOM05D000860 ORTHO05D005731 3.1e-30 136.3 230 39.1
Glyma.13G139300 Glycine max HOM05D000860 ORTHO05D005731 4.1e-30 136.0 234 41.0
Ca_08841_v3 Cicer arietinum L. HOM05D000860 ORTHO05D005731 1.2e-29 134.4 249 36.9
RcHm_v2.0_Chr7g0226531 Rosa chinensis HOM05D000860 ORTHO05D005731 1.2e-29 134.4 186 45.2
Gohir.D13G024000 Gossypium hirsutum HOM05D000860 ORTHO05D005731 2.0e-29 133.7 232 39.2
Medtr1g064690 Medicago truncatula HOM05D000860 ORTHO05D005731 4.5e-29 132.5 235 38.7
Psat6g067960 Pisum sativum HOM05D000860 ORTHO05D005731 1.7e-28 130.6 247 36.8
Psat3g043560 Pisum sativum HOM05D000860 ORTHO05D005731 2.2e-28 130.2 243 38.3
TPR.G21206 Trifolium pratense HOM05D000860 ORTHO05D005731 3.8e-28 129.4 254 36.6
Gohir.A01G215400 Gossypium hirsutum HOM05D000860 ORTHO05D005731 5.0e-28 129.0 232 40.1
Hma1.2p1_1031F.1_g249970 Hydrangea macrophylla HOM05D000860 ORTHO05D005731 1.5e-27 127.5 244 36.9
Phvul.007G221200 Phaseolus vulgaris HOM05D000860 ORTHO05D005731 1.9e-27 127.1 229 36.7
TPR.G18266 Trifolium pratense HOM05D000860 ORTHO05D005731 2.5e-27 126.7 245 39.2
Sabra16G0094600 Salix brachista HOM05D000860 ORTHO05D005731 3.2e-27 126.3 249 37.3
Gorai.002G248500 Gossypium raimondii HOM05D000860 ORTHO05D005731 5.5e-27 125.6 232 39.2
Potri.016G088900 Populus trichocarpa HOM05D000860 ORTHO05D005731 5.5e-27 125.6 263 35.4
CSS0027524 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D005731 7.2e-27 125.2 256 37.1
CSS0043489 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D005731 7.2e-27 125.2 256 37.1
Manes.09G068966 Manihot esculenta HOM05D000860 ORTHO05D005731 7.2e-27 125.2 187 43.3
Rhsim01G0217500 Rhododendron simsii HOM05D000860 ORTHO05D005731 2.1e-26 123.6 268 36.2
vmacro14442 Vaccinium macrocarpon HOM05D000860 ORTHO05D005731 2.7e-26 123.2 268 36.6
Nn2g10774 Nelumbo nucifera HOM05D000860 ORTHO05D005731 1.8e-25 120.6 241 34.0
Aqoxy1G01248 Aquilegia oxysepala HOM05D000860 ORTHO05D005731 1.3e-23 114.4 263 31.9
Migut.O00631 Erythranthe guttata HOM05D000860 ORTHO05D005731 1.7e-23 114.0 260 33.8
AUR62042284 Chenopodium quinoa HOM05D000860 ORTHO05D005731 2.8e-23 113.2 261 32.6
AUR62040362 Chenopodium quinoa HOM05D000860 ORTHO05D005731 2.4e-22 110.2 261 32.6
Sc20g0005200 Simmondsia chinensis HOM05D000860 ORTHO05D005731 2.4e-22 110.2 260 33.1
Peaxi162Scf00270g00092 Petunia axillaris HOM05D000860 ORTHO05D005731 3.1e-22 109.8 274 34.7
Lsat_1_v5_gn_6_46140 Lactuca sativa HOM05D000860 ORTHO05D005731 4.1e-22 109.4 243 34.6
Glyma.03G180300 Glycine max HOM05D000860 ORTHO05D005731 7.0e-22 108.6 265 35.8
SGA_v2.0_scaffold97G29220 Striga asiatica HOM05D000860 ORTHO05D005731 1.2e-21 107.8 272 32.7
EL10Ac7g16545 Beta vulgaris HOM05D000860 ORTHO05D005731 1.6e-21 107.5 249 32.5
Oeu001264.1 Olea europaea HOM05D000860 ORTHO05D005731 2.7e-21 106.7 266 33.5
DCAR_022736 Daucus carota HOM05D000860 ORTHO05D005731 5.9e-21 105.5 159 42.8
Ah.15g092300 Amaranthus hybridus HOM05D000860 ORTHO05D005731 7.7e-21 105.1 261 31.8
VMungo1383G0750 Vigna mungo HOM05D000860 ORTHO05D005731 1.0e-20 104.8 260 35.4
PSO339G5579 Papaver somniferum HOM05D000860 ORTHO05D005731 1.3e-20 104.4 269 35.3
Migut.D02216 Erythranthe guttata HOM05D000860 ORTHO05D005731 1.7e-20 104.0 264 33.7
MBI10_g20798_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D005731 2.2e-20 103.6 251 34.3
Gohir.D01G204000 Gossypium hirsutum HOM05D000860 ORTHO05D005731 2.9e-20 103.2 155 45.8
PSO063G2151 Papaver somniferum HOM05D000860 ORTHO05D005731 5.0e-20 102.4 269 34.9
THA.LOC104806503 Tarenaya hassleriana HOM05D000860 ORTHO05D005731 5.0e-20 102.4 184 36.4
Ca_11464_v3 Cicer arietinum L. HOM05D000860 ORTHO05D005731 6.5e-20 102.1 190 37.9
RcHm_v2.0_Chr1g0337551 Rosa chinensis HOM05D000860 ORTHO05D005731 6.5e-20 102.1 147 45.6
SalBow3G0016 Salvia bowleyana HOM05D000860 ORTHO05D005731 8.5e-20 101.7 261 34.9
Nitab4.5_0003701g0030 Nicotiana tabacum HOM05D000860 ORTHO05D005731 1.9e-19 100.5 274 32.8
QL09p001288 Quercus lobata HOM05D000860 ORTHO05D005731 1.9e-19 100.5 140 46.4
Aa31LG10G8580 Aethionema arabicum HOM05D000860 ORTHO05D005731 3.2e-19 99.8 231 35.5
DCAR_018816 Daucus carota HOM05D000860 ORTHO05D005731 3.2e-19 99.8 251 33.9
Nitab4.5_0000650g0160 Nicotiana tabacum HOM05D000860 ORTHO05D005731 3.2e-19 99.8 274 32.5
Solyc11g069330.1 Solanum lycopersicum HOM05D000860 ORTHO05D005731 4.2e-19 99.4 273 34.4
Sopen11g028050 Solanum pennellii HOM05D000860 ORTHO05D005731 4.2e-19 99.4 273 34.4
CAN.G631.19 Capsicum annuum HOM05D000860 ORTHO05D005731 9.4e-19 98.2 267 33.3
PGSC0003DMG400008059 Solanum tuberosum HOM05D000860 ORTHO05D005731 1.2e-18 97.8 273 34.1
ATR0115G014 Amborella trichopoda HOM05D000860 ORTHO05D005731 1.6e-18 97.4 172 36.0
Thhalv10011158m.g Eutrema salsugineum HOM05D000860 ORTHO05D005731 1.6e-18 97.4 254 31.9
Glyma.19G181000 Glycine max HOM05D000860 ORTHO05D005731 4.7e-18 95.9 247 35.6
CARHR163310 Cardamine hirsuta HOM05D000860 ORTHO05D005731 4.0e-17 92.8 250 30.8
Cc01_g11220 Coffea canephora HOM05D000860 ORTHO05D005731 6.8e-17 92.0 251 33.9
AT3G53400 Arabidopsis thaliana HOM05D000860 ORTHO05D005731 2.0e-16 90.5 246 29.3
C04p39180 Brassica napus HOM05D000860 ORTHO05D005731 2.0e-16 90.5 251 30.7
HanXRQChr13g0403481 Helianthus annuus HOM05D000860 ORTHO05D005731 2.0e-16 90.5 158 37.3
Carub.0005s1996 Capsella rubella HOM05D000860 ORTHO05D005731 4.4e-16 89.4 258 29.1
Phvul.001G176600 Phaseolus vulgaris HOM05D000860 ORTHO05D005731 4.4e-16 89.4 227 34.8
BolC4t25490H Brassica oleracea HOM05D000860 ORTHO05D005731 5.7e-16 89.0 200 32.5
Sp5g08940 Schrenkiella parvula HOM05D000860 ORTHO05D005731 7.5e-16 88.6 256 31.2
A04p06160 Brassica napus HOM05D000860 ORTHO05D005731 9.8e-16 88.2 240 30.8
BcaC02g09168 Brassica carinata HOM05D000860 ORTHO05D005731 1.3e-15 87.8 251 29.9
THA.LOC104816335 Tarenaya hassleriana HOM05D000860 ORTHO05D005731 1.7e-15 87.4 251 29.5
BraA04t16319Z Brassica rapa HOM05D000860 ORTHO05D005731 2.2e-15 87.0 240 30.8
BcaB02g08527 Brassica carinata HOM05D000860 ORTHO05D005731 1.4e-14 84.3 240 32.9
AL5G34320 Arabidopsis lyrata HOM05D000860 ORTHO05D005731 1.8e-14 84.0 257 29.2
ECA233G3204 Erigeron canadensis HOM05D000860 ORTHO05D005731 3.1e-14 83.2 168 35.7
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 7.0e-14 82.0 118 44.1
Aa31LG1G21890 Aethionema arabicum HOM05D000860 ORTHO05D005731 1.6e-13 80.9 246 26.4
Nn1g03119 Nelumbo nucifera HOM05D000860 ORTHO05D005731 1.6e-13 80.9 91 46.2
AT5G03190 Arabidopsis thaliana HOM05D000860 ORTHO05D005731 1.0e-12 78.2 268 29.9
Psat6g084760 Pisum sativum HOM05D000860 ORTHO05D005731 1.3e-12 77.8 118 43.2
SalBow3G3227 Salvia bowleyana HOM05D000860 ORTHO05D005731 2.3e-12 77.0 169 37.3
Lsat_1_v5_gn_1_65400 Lactuca sativa HOM05D000860 ORTHO05D005731 3.8e-12 76.3 191 30.4
unitig_22.g6662 Utricularia gibba HOM05D000860 ORTHO05D005731 1.1e-11 74.7 169 34.9
AL6G12470 Arabidopsis lyrata HOM05D000860 ORTHO05D005731 2.5e-11 73.6 248 29.8
ECA248G3821 Erigeron canadensis HOM05D000860 ORTHO05D005731 4.2e-11 72.8 133 39.1
Actinidia20451 Actinidia chinensis HOM05D000860 ORTHO05D005731 3.6e-10 69.7 86 44.2
CARHR210160 Cardamine hirsuta HOM05D000860 ORTHO05D005731 3.6e-10 69.7 243 29.2
Sp6g39530 Schrenkiella parvula HOM05D000860 ORTHO05D005731 3.6e-10 69.7 231 30.3
Aqoxy6G01123 Aquilegia oxysepala HOM05D000860 ORTHO05D026722 5.7e-08 62.4 131 33.6
Nn7g37700 Nelumbo nucifera HOM05D000860 ORTHO05D026722 2.2e-07 60.5 251 27.5
Nn1g03114 Nelumbo nucifera HOM05D000860 ORTHO05D005731 1.4e-06 57.8 97 37.1
Actinidia03733 Actinidia chinensis HOM05D000860 ORTHO05D005731 1.8e-06 57.4 140 35.7
Lalb_Chr25g0289151 Lupinus albus HOM05D000860 ORTHO05D005731 1.8e-06 57.4 69 53.6
PSO541G0433 Papaver somniferum HOM05D000860 ORTHO05D026722 1.8e-06 57.4 133 31.6
Cpa.g.c33722 Carica papaya HOM05D000860 ORTHO05D005731 3.1e-06 56.6 91 44.0


User provided reference genes

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