Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 8.3e-146 520.4 271 100.0
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.6e-99 365.9 287 74.9
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.5e-86 323.6 289 69.9
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 4.7e-56 222.2 266 53.8
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.3e-42 177.6 326 41.1
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 2.5e-41 173.3 319 41.4
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 4.4e-38 162.5 282 43.6
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-38 162.5 310 39.0
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.7e-37 160.6 309 42.1
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 2.2e-37 160.2 324 38.6
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.2e-37 160.2 300 41.7
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 2.9e-37 159.8 305 40.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 6.4e-37 158.7 301 41.2
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 5.4e-36 155.6 323 39.3
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.2e-35 154.5 300 40.7
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 2.1e-35 153.7 314 40.4
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.7e-35 153.3 326 39.3
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.7e-34 150.6 281 39.5
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.3e-34 150.2 281 39.5
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 3.0e-34 149.8 322 37.6
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.1e-33 147.9 326 41.4
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.9e-33 147.1 302 38.1
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 3.3e-33 146.4 278 42.4
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.3e-33 145.2 281 38.4
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.1e-32 143.7 308 39.6
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.6e-32 142.9 323 39.9
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 6.2e-32 142.1 324 38.9
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.8e-31 140.6 300 38.0
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 4.0e-31 139.4 338 35.5
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 6.8e-31 138.7 330 38.2
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.5e-30 137.5 272 40.8
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.0e-30 137.1 294 40.1
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 3.4e-30 136.3 273 40.3
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 3.4e-30 136.3 297 40.7
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-30 136.0 203 45.3
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-30 136.0 203 45.3
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-30 135.6 203 44.3
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-30 135.6 203 44.3
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 9.9e-30 134.8 321 38.6
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.2e-29 133.7 276 39.5
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.9e-29 133.3 322 35.7
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 3.7e-29 132.9 326 38.0
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.7e-29 132.9 326 38.0
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 3.7e-29 132.9 270 43.0
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 4.9e-29 132.5 203 44.8
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 4.9e-29 132.5 203 44.8
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 6.4e-29 132.1 276 38.8
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 6.4e-29 132.1 324 37.7
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 8.3e-29 131.7 288 39.6
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 8.3e-29 131.7 319 36.1
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-28 131.3 326 37.7
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.1e-28 131.3 285 39.3
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.4e-28 131.0 314 36.6
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.9e-28 130.6 314 34.4
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 2.4e-28 130.2 291 38.5
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 4.1e-28 129.4 276 38.4
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 5.4e-28 129.0 305 35.7
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 5.4e-28 129.0 203 43.8
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 5.4e-28 129.0 312 39.1
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 7.1e-28 128.6 330 37.6
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 9.2e-28 128.3 318 37.4
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.2e-27 127.9 312 35.6
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.2e-27 127.9 318 35.5
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 2.7e-27 126.7 318 37.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.7e-27 126.7 315 37.5
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.7e-27 126.7 314 35.0
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 2.7e-27 126.7 268 41.8
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 6.0e-27 125.6 295 38.6
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 8.6e-26 121.7 289 36.3
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 8.6e-26 121.7 268 39.2
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-25 120.9 182 46.2
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-25 119.8 182 46.2
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 5.6e-25 119.0 182 45.6
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 5.6e-25 119.0 300 37.3
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.2e-24 117.9 298 38.9
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.2e-24 117.9 275 37.8
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 2.1e-24 117.1 219 41.1
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 3.6e-24 116.3 331 36.0
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 3.6e-24 116.3 275 37.5
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 4.7e-24 115.9 346 35.3
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.1e-23 114.8 335 34.3
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 3.1e-23 113.2 269 37.2
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 5.2e-23 112.5 289 37.7
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.5e-22 110.9 310 34.8
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 3.4e-22 109.8 263 36.9
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 3.4e-22 109.8 283 36.0
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 7.6e-22 108.6 285 36.5
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 7.6e-22 108.6 318 36.2
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 9.9e-22 108.2 332 34.0
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.7e-21 107.5 281 36.7
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 3.8e-21 106.3 277 35.0
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.8e-21 106.3 325 34.2
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 4.9e-21 105.9 261 38.7
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 4.9e-21 105.9 273 35.2
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 6.4e-21 105.5 285 34.0
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.4e-20 104.4 282 34.4
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.9e-20 104.0 305 34.8
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.4e-20 103.6 280 36.1
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 3.2e-20 103.2 321 30.8
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 5.4e-20 102.4 189 42.3
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 5.4e-20 102.4 281 36.7
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 7.1e-20 102.1 339 31.9
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 7.1e-20 102.1 200 39.5
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 9.2e-20 101.7 270 35.2
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.2e-19 101.3 85 65.9
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.2e-19 101.3 289 35.3
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 1.6e-19 100.9 225 36.4
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.6e-19 99.4 149 41.6
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.0e-18 98.2 284 34.2
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 6.6e-18 95.5 284 33.1
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 6.6e-18 95.5 291 33.0
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 8.7e-18 95.1 301 34.2
MELO3C015637.2 Cucumis melo HOM05D014642 ORTHO05D004928 1.5e-17 94.4 93 65.6
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-17 94.4 356 30.3
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 2.5e-17 93.6 276 35.5
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.5e-17 93.6 276 35.5
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.5e-17 93.6 276 35.5
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 9.6e-17 91.7 270 32.6
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 1.2e-16 91.3 278 34.5
MELO3C004718.2 Cucumis melo HOM05D014642 ORTHO05D004928 1.6e-16 90.9 94 64.9
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.8e-16 90.1 269 32.3
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 4.7e-16 89.4 293 34.8
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 6.2e-16 89.0 294 35.7
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 6.2e-16 89.0 294 35.7
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 6.2e-16 89.0 71 73.2
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 8.1e-16 88.6 298 33.6
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.1e-15 88.2 306 32.7
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.8e-15 87.4 279 33.0
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 5.3e-15 85.9 297 34.7
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 5.3e-15 85.9 287 34.8
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 5.3e-15 85.9 317 31.9
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 6.9e-15 85.5 291 32.6
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 6.9e-15 85.5 73 61.6
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 9.0e-15 85.1 168 39.3
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.2e-14 84.7 124 45.2
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 2.0e-14 84.0 297 35.0
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.6e-14 83.6 300 33.0
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 4.4e-14 82.8 269 34.2
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 5.8e-14 82.4 284 33.5
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 5.8e-14 82.4 318 33.0
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 3.8e-13 79.7 227 33.9
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 7.1e-12 75.5 218 36.7
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 1.2e-11 74.7 274 31.0
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 3.5e-11 73.2 258 31.8
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 8.1e-08 62.0 256 30.1
MELO3C031153.2 Cucumis melo HOM05D014642 ORTHO05D004928 1.1e-07 61.6 93 52.7
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 1.4e-07 61.2 313 28.1
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 4.0e-07 59.7 407 27.8
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 2.0e-06 57.4 260 29.2
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.6e-06 57.0 174 35.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 5.8e-06 55.8 86 45.3
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 7.6e-06 55.5 233 30.0


User provided reference genes

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