Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 4.1e-139 498.0 249 100.0
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 4.6e-42 175.6 182 54.4
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 1.3e-41 174.1 182 52.7
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 1.6e-34 150.6 190 48.4
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 1.3e-31 141.0 181 45.9
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 1.1e-30 137.9 183 44.8
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 2.6e-29 133.3 186 44.6
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 2.2e-28 130.2 183 44.8
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 1.4e-25 120.9 191 38.2
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 1.8e-25 120.6 174 43.1
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 1.8e-25 120.6 184 41.3
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 2.6e-24 116.7 180 41.7
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 2.6e-24 116.7 180 41.7
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 4.4e-24 115.9 188 38.8
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 1.7e-23 114.0 185 38.9
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 3.7e-23 112.8 175 39.4
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 4.8e-23 112.5 188 37.8
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 4.8e-23 112.5 175 38.9
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 6.3e-23 112.1 197 38.1
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 6.3e-23 112.1 188 39.9
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 1.8e-22 110.5 196 38.3
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 3.1e-22 109.8 70 62.9
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 9.1e-22 108.2 162 38.3
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 1.5e-21 107.5 189 39.7
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 3.4e-21 106.3 179 37.4
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 3.4e-21 106.3 180 36.1
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 7.7e-21 105.1 179 37.4
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 1.0e-20 104.8 186 35.5
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 2.2e-20 103.6 179 36.9
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 2.9e-20 103.2 180 37.8
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 5.0e-20 102.4 69 65.2
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 1.4e-19 100.9 185 35.7
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 1.9e-19 100.5 171 36.8
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 2.5e-19 100.1 69 60.9
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 4.2e-19 99.4 91 45.1
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 5.5e-19 99.0 73 56.2
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 5.5e-19 99.0 186 35.5
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 7.2e-19 98.6 75 56.0
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 9.4e-19 98.2 70 61.4
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 9.4e-19 98.2 190 34.7
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 1.2e-18 97.8 197 34.0
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 1.2e-18 97.8 71 53.5
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 1.6e-18 97.4 70 57.1
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 2.1e-18 97.1 180 36.1
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 3.6e-18 96.3 70 58.6
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 4.7e-18 95.9 70 55.7
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 4.7e-18 95.9 71 52.1
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 4.7e-18 95.9 149 36.2
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 8.0e-18 95.1 168 35.7
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 8.0e-18 95.1 70 57.1
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 1.0e-17 94.7 83 49.4
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 1.8e-17 94.0 150 34.0
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 2.3e-17 93.6 184 37.5
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 3.9e-17 92.8 70 55.7
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 8.8e-17 91.7 70 58.6
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 1.1e-16 91.3 183 36.6
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 7.4e-16 88.6 91 40.7
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 9.7e-16 88.2 156 35.3
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 9.7e-16 88.2 91 40.7
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 9.7e-16 88.2 60 63.3
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 1.3e-15 87.8 197 33.5
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 1.7e-15 87.4 168 34.5
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 3.7e-15 86.3 70 54.3
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 4.8e-15 85.9 63 55.6
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 4.8e-15 85.9 177 33.3
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 4.8e-15 85.9 70 51.4
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 1.1e-14 84.7 77 45.5
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 1.8e-14 84.0 211 29.4
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 1.8e-14 84.0 66 48.5
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 3.1e-14 83.2 87 48.3
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 9.1e-14 81.6 125 37.6
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 1.6e-13 80.9 65 52.3
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.6e-13 80.9 74 48.6
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 1.6e-13 80.9 200 32.0
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 2.0e-13 80.5 76 50.0
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 2.0e-13 80.5 76 50.0
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 2.0e-13 80.5 76 50.0
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 2.0e-13 80.5 76 50.0
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 2.0e-13 80.5 71 50.7
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.0e-13 80.5 71 50.7
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 4.5e-13 79.3 200 31.0
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 4.5e-13 79.3 71 49.3
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 5.9e-13 79.0 201 29.9
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.0e-12 78.2 71 49.3
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 2.9e-12 76.6 65 52.3
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 6.5e-12 75.5 65 50.8
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 8.5e-12 75.1 65 50.8
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 1.1e-11 74.7 72 44.4
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 1.9e-11 73.9 178 34.8
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 2.5e-11 73.6 69 46.4
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 3.2e-11 73.2 79 44.3
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 5.5e-11 72.4 79 44.3
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 7.2e-11 72.0 77 45.5
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 1.0e-09 68.2 60 46.7
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 1.0e-09 68.2 151 35.1
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 2.3e-09 67.0 62 40.3
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 4.1e-06 56.2 34 67.6
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 5.3e-06 55.8 36 55.6


User provided reference genes

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