Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 4.0e-240 834.3 415 100.0
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 5.0e-190 667.9 382 87.7
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 4.2e-189 664.8 377 89.7
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 6.1e-172 607.8 436 75.5
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 3.1e-160 568.9 375 75.7
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 4.1e-160 568.5 386 75.9
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.6e-159 566.6 375 75.5
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 2.0e-159 566.2 378 75.4
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 3.5e-159 565.5 381 75.9
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 8.5e-158 560.8 384 74.0
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.5e-157 559.3 339 81.1
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.5e-157 559.3 378 74.1
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.2e-157 558.9 378 74.1
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 5.5e-157 558.1 384 75.0
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 3.6e-156 555.4 377 73.7
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.8e-155 553.1 379 73.6
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 2.3e-155 552.7 383 73.4
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.0e-155 552.4 381 74.3
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 4.0e-155 552.0 329 79.6
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 4.0e-155 552.0 379 74.7
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 5.2e-155 551.6 384 74.7
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 5.7e-154 548.1 377 71.9
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 6.3e-153 544.7 385 70.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 6.3e-153 544.7 345 76.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.1e-152 542.0 378 72.0
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 7.0e-152 541.2 323 79.9
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.0e-151 539.7 377 70.8
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 2.0e-151 539.7 380 70.0
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 2.7e-151 539.3 375 70.7
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 2.7e-151 539.3 391 70.1
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 3.5e-151 538.9 373 72.9
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 7.7e-151 537.7 377 71.6
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.0e-150 537.3 388 68.8
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.2e-150 536.2 380 71.6
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.2e-150 536.2 339 76.1
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.9e-150 535.8 378 70.1
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 3.8e-150 535.4 335 77.3
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 5.0e-150 535.0 380 71.3
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 5.0e-150 535.0 374 71.7
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 6.5e-150 534.6 385 70.9
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 8.5e-150 534.3 402 68.4
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.9e-149 533.1 387 69.8
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.2e-149 532.3 386 69.9
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 4.2e-149 531.9 377 68.2
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 9.4e-149 530.8 382 69.4
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.2e-148 530.4 388 69.6
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.6e-148 530.0 380 69.5
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.6e-148 530.0 320 78.4
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 2.1e-148 529.6 378 69.8
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 2.7e-148 529.3 378 69.0
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 2.7e-148 529.3 336 76.5
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 3.6e-148 528.9 382 69.4
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 3.6e-148 528.9 383 71.0
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 3.6e-148 528.9 378 68.5
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 4.7e-148 528.5 382 69.4
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 6.1e-148 528.1 379 69.7
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 8.0e-148 527.7 383 69.5
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-147 527.3 378 68.8
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.3e-147 526.2 384 70.3
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 3.0e-147 525.8 378 66.9
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.2e-147 525.0 372 70.7
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.2e-146 523.9 399 68.2
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-146 523.9 382 69.1
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.2e-146 523.9 370 71.4
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.2e-146 523.9 378 69.3
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.5e-146 523.5 379 69.1
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 2.0e-146 523.1 378 69.0
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.0e-146 523.1 382 69.1
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 5.7e-146 521.5 379 69.1
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 5.7e-146 521.5 382 68.8
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 7.5e-146 521.2 384 68.0
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 9.8e-146 520.8 381 69.8
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 9.8e-146 520.8 385 68.3
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.7e-145 520.0 340 72.6
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.7e-145 520.0 378 68.8
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-145 519.2 381 69.8
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.8e-145 519.2 381 69.8
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.8e-145 519.2 345 74.2
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 3.7e-145 518.8 340 72.4
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.9e-145 518.5 377 69.0
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 4.9e-145 518.5 379 67.5
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 8.3e-145 517.7 383 69.2
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 8.3e-145 517.7 387 67.2
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.1e-144 517.3 382 69.6
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.1e-144 517.3 379 66.5
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.8e-144 516.5 382 68.6
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 4.1e-144 515.4 395 66.3
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 9.2e-144 514.2 382 67.5
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 9.2e-144 514.2 380 66.3
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 9.2e-144 514.2 369 70.7
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 4.5e-143 511.9 378 67.2
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.0e-142 510.8 379 69.9
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.7e-142 510.0 381 69.8
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.3e-142 509.6 384 68.0
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.9e-142 509.2 380 67.1
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-141 506.5 387 66.9
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.9e-141 506.5 383 65.3
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 8.9e-139 497.7 369 67.8
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.2e-138 497.3 383 63.7
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 2.0e-138 496.5 327 72.5
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.7e-137 492.3 398 66.8
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 4.9e-137 491.9 337 71.8
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 8.3e-137 491.1 494 54.5
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.4e-136 489.6 378 67.2
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 4.1e-136 488.8 374 66.3
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 7.8e-135 484.6 342 72.5
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 4.7e-132 475.3 336 71.1
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 6.8e-131 471.5 327 68.5
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 4.7e-124 448.7 341 66.3
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 8.1e-124 448.0 354 65.8
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.8e-123 446.8 336 69.6
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.4e-120 437.2 295 72.9
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 5.2e-115 418.7 299 66.9
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 2.2e-113 413.3 355 59.7
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.9e-113 412.9 331 62.5
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 2.7e-111 406.4 387 57.9
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 5.6e-109 398.7 360 61.1
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 1.8e-107 393.7 283 68.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.0e-107 392.5 262 72.5
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.1e-104 384.4 304 63.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.6e-103 380.6 335 57.6
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 6.6e-102 375.2 249 75.1
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.3e-97 360.9 302 59.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 5.4e-96 355.5 276 63.0
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.5e-93 346.7 257 67.7
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.6e-90 336.7 310 54.2
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.4e-88 330.9 360 53.9
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 3.1e-83 313.2 306 54.2
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.9e-77 293.9 153 88.9
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.7e-71 273.5 185 72.4
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.7e-63 246.9 247 51.0
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 2.0e-58 230.7 131 77.9
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 4.7e-55 219.5 144 73.6
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-53 214.2 147 71.4
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.9e-49 200.3 350 40.6
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 5.5e-48 196.1 147 67.3
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-45 187.6 147 66.0
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.4e-43 180.6 100 78.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 6.5e-41 172.6 148 58.1
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-38 164.9 147 57.1
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.5e-32 144.8 112 59.8
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 6.8e-30 136.0 71 88.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.7e-20 104.8 57 78.9
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 6.4e-20 102.8 114 51.8
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.8e-19 101.3 60 78.3
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 5.4e-19 99.8 67 68.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 5.4e-19 99.8 67 68.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 2.8e-15 87.4 45 82.2
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 6.2e-15 86.3 45 82.2
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.4e-14 85.1 44 84.1
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 4.4e-13 80.1 41 80.5
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.7e-12 77.0 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 5.4e-11 73.2 40 87.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 1.9e-08 64.7 70 50.0
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 1.4e-06 58.5 117 29.9
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 3.1e-06 57.4 51 56.9


User provided reference genes

Program Settings