Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G008210 Citrullus lanatus HOM05D023073 ORTHO05D005174 9.7e-77 290.0 144 100.0
CsaV3_4G024960 Cucumis sativus L. HOM05D023073 ORTHO05D005174 1.5e-40 169.9 152 65.1
MELO3C003127.2 Cucumis melo HOM05D023073 ORTHO05D005174 7.3e-40 167.5 154 63.6
Sed0016652 Sechium edule HOM05D023073 ORTHO05D005174 9.5e-32 140.6 152 55.9
Sed0010435 Sechium edule HOM05D023073 ORTHO05D005174 1.6e-23 113.2 128 51.6
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 8.1e-15 84.3 89 51.7
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 5.3e-14 81.6 92 50.0
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 1.3e-12 77.0 83 47.0
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.8e-12 75.5 82 51.2
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 3.5e-10 68.9 100 43.0
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 1.3e-09 67.0 69 44.9
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.8e-09 66.6 93 40.9
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.3e-09 66.2 86 47.7
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.3e-09 66.2 86 47.7
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 3.0e-09 65.9 88 44.3
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 3.9e-09 65.5 84 39.3
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 3.9e-09 65.5 92 44.6
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 8.7e-09 64.3 81 44.4
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 8.7e-09 64.3 80 46.2
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 8.7e-09 64.3 111 38.7
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 1.5e-08 63.5 84 45.2
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 1.9e-08 63.2 80 45.0
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 2.5e-08 62.8 90 40.0
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 2.5e-08 62.8 78 43.6
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 4.3e-08 62.0 95 38.9
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 4.3e-08 62.0 81 45.7
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 5.6e-08 61.6 84 42.9
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 7.4e-08 61.2 85 44.7
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 9.6e-08 60.8 84 41.7
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 9.6e-08 60.8 83 47.0
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.3e-07 60.5 85 38.8
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 1.3e-07 60.5 83 44.6
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 1.6e-07 60.1 109 40.4
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.6e-07 60.1 84 44.0
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 2.1e-07 59.7 82 41.5
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 2.1e-07 59.7 83 47.0
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 2.8e-07 59.3 81 43.2
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.8e-07 59.3 84 44.0
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 2.8e-07 59.3 83 44.6
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 4.8e-07 58.5 87 42.5
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 6.2e-07 58.2 81 42.0
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 6.2e-07 58.2 78 47.4
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 8.1e-07 57.8 76 42.1
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 1.1e-06 57.4 84 41.7
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 1.1e-06 57.4 103 38.8
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 1.4e-06 57.0 84 40.5
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.4e-06 57.0 93 40.9
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 1.4e-06 57.0 90 43.3
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.8e-06 56.6 91 44.0
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.8e-06 56.6 85 40.0
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.4e-06 56.2 84 41.7
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 2.4e-06 56.2 79 43.0
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 3.1e-06 55.8 83 39.8
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 3.1e-06 55.8 87 41.4
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 3.1e-06 55.8 103 35.9
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 4.0e-06 55.5 81 39.5
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 4.0e-06 55.5 86 36.0
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 5.3e-06 55.1 79 40.5
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 5.3e-06 55.1 86 41.9
SalBow3G2287 Salvia bowleyana HOM05D005967 ORTHO05D005174 6.9e-06 54.7 82 40.2
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 9.0e-06 54.3 83 43.4
MD12G1140600 Malus domestica HOM05D005967 ORTHO05D005174 9.0e-06 54.3 97 38.1


User provided reference genes

Program Settings