Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 2.0e-281 971.8 510 100.0
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 5.0e-277 957.2 510 98.4
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 1.6e-270 935.6 510 95.1
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 2.5e-268 928.3 510 94.5
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 8.3e-264 913.3 510 91.8
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.1e-263 912.9 510 92.5
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.9e-263 912.1 510 92.5
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 1.7e-261 905.6 510 91.0
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 1.9e-260 902.1 511 91.0
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 3.3e-260 901.4 510 90.0
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 3.3e-260 901.4 510 90.2
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 7.3e-260 900.2 510 90.0
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.2e-259 899.4 510 91.2
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 2.8e-259 898.3 510 90.0
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 6.2e-259 897.1 510 91.6
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 6.2e-259 897.1 511 90.2
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 1.8e-258 895.6 511 90.2
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 3.1e-258 894.8 510 91.8
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 3.1e-258 894.8 509 90.4
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 4.0e-258 894.4 511 90.6
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 5.2e-258 894.0 511 90.0
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 5.2e-258 894.0 510 90.2
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 6.8e-258 893.6 510 91.0
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 8.9e-258 893.3 510 90.2
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.2e-257 892.9 510 90.0
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 2.0e-257 892.1 511 90.0
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 2.6e-257 891.7 510 89.6
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 3.4e-257 891.3 510 89.8
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 5.8e-257 890.6 510 89.2
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 7.5e-257 890.2 510 88.4
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 9.8e-257 889.8 510 89.6
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 1.3e-256 889.4 510 89.0
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 2.2e-256 888.6 510 89.2
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 4.9e-256 887.5 510 89.0
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 6.4e-256 887.1 510 88.2
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 1.1e-255 886.3 510 88.8
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.1e-255 886.3 510 89.2
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 1.9e-255 885.6 510 88.2
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 2.4e-255 885.2 510 87.8
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.1e-255 884.4 512 89.5
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 5.4e-255 884.0 510 87.8
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 7.1e-255 883.6 510 87.8
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 9.2e-255 883.2 510 87.5
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 1.2e-254 882.9 510 88.6
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.6e-254 882.5 510 87.8
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 1.6e-254 882.5 510 89.4
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.1e-254 882.1 510 87.8
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.1e-254 882.1 510 88.2
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 88.6
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 6.0e-254 880.6 510 88.4
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 7.8e-254 880.2 511 88.1
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 7.8e-254 880.2 510 88.6
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 7.8e-254 880.2 510 88.6
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 7.8e-254 880.2 510 89.8
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 87.1
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.0e-253 879.8 511 89.4
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 87.5
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 88.4
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.7e-253 879.0 510 89.2
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 2.3e-253 878.6 510 88.2
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 3.9e-253 877.9 511 88.5
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 5.1e-253 877.5 510 89.2
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 6.6e-253 877.1 510 88.2
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 8.6e-253 876.7 510 88.0
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 1.1e-252 876.3 511 88.3
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 3.3e-252 874.8 511 87.5
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 4.3e-252 874.4 527 87.5
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 7.3e-252 873.6 510 87.8
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 86.5
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 87.8
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 86.3
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 86.5
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 87.6
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 3.6e-251 871.3 510 87.6
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 8.1e-251 870.2 510 86.3
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 1.4e-250 869.4 510 88.2
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 3.1e-250 868.2 510 87.6
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 3.1e-250 868.2 510 87.1
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 3.1e-250 868.2 510 88.2
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 6.8e-250 867.1 510 88.0
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 8.9e-250 866.7 510 87.1
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 5.8e-249 864.0 549 83.1
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 2.2e-248 862.1 510 86.9
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.4e-247 858.6 510 86.5
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 7.1e-247 857.1 510 86.1
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.2e-246 856.3 510 85.7
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 2.1e-246 855.5 502 88.2
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 85.9
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 85.9
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 85.9
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 7.8e-246 853.6 512 87.3
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.0e-245 853.2 510 85.9
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.0e-245 853.2 511 85.5
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.7e-245 852.4 510 85.9
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 5.1e-245 850.9 511 85.9
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.1e-244 849.7 511 85.9
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 1.2e-243 846.3 512 86.3
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 2.1e-243 845.5 510 83.7
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 1.1e-242 843.2 511 85.1
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.1e-242 843.2 505 87.1
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 1.4e-242 842.8 511 85.1
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.4e-242 842.8 510 84.1
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 4.0e-242 841.3 510 83.7
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 4.0e-242 841.3 510 83.9
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 4.0e-242 841.3 510 83.9
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 5.2e-242 840.9 510 83.7
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 1.2e-241 839.7 510 83.7
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 2.0e-241 839.0 494 86.0
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 3.4e-241 838.2 494 86.6
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 3.4e-241 838.2 556 80.0
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 1.7e-240 835.9 472 91.7
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 6.4e-240 833.9 494 87.9
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 6.4e-240 833.9 524 82.8
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.4e-239 832.0 511 83.6
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 1.3e-237 826.2 489 85.5
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.5e-236 822.8 494 85.6
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 1.6e-235 819.3 494 86.6
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 2.4e-231 805.4 511 80.4
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 4.2e-231 804.7 511 81.0
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 9.3e-231 803.5 547 77.1
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 5.6e-228 794.3 511 79.3
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 9.6e-228 793.5 512 81.8
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 4.0e-226 788.1 510 82.0
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 9.0e-226 786.9 511 80.0
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 2.0e-225 785.8 472 90.5
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.6e-225 785.4 512 80.1
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.3e-224 783.1 524 79.8
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.3e-224 783.1 524 79.8
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 2.7e-222 775.4 510 79.8
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 4.5e-217 758.1 441 86.4
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 3.8e-208 728.4 511 76.7
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 3.0e-205 718.8 503 76.3
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 8.2e-203 710.7 413 88.4
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 7.2e-199 697.6 510 74.1
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 5.9e-193 677.9 514 66.0
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.6e-190 669.8 503 69.6
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 3.5e-185 652.1 468 73.5
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 7.7e-185 651.0 375 88.5
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.1e-178 629.0 514 62.3
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 4.4e-172 608.6 364 86.8
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 9.8e-172 607.4 365 86.6
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 5.9e-169 598.2 379 81.8
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 1.0e-168 597.4 522 60.7
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 3.8e-168 595.5 511 60.5
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 3.6e-166 589.0 504 66.9
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.5e-164 583.6 496 59.7
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 5.0e-160 568.5 325 91.7
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.5e-159 567.0 499 56.3
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 6.8e-157 558.1 347 83.6
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 1.3e-152 543.9 307 93.2
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.9e-152 542.3 457 68.3
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.6e-142 509.2 284 93.7
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 1.3e-131 474.2 383 62.4
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.4e-122 442.2 254 87.4
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 9.0e-117 424.9 513 46.6
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.2e-114 416.0 245 89.4
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 6.4e-107 392.1 486 44.7
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.1e-105 387.1 386 54.4
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.5e-103 380.9 267 76.0
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 1.0e-96 358.2 519 38.5
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.2e-83 313.9 199 85.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.5e-71 274.6 345 47.0
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 4.5e-68 263.1 503 38.4
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.6e-60 238.0 144 85.4
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.4e-58 228.8 289 45.7
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 4.0e-56 223.4 362 41.4
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 6.1e-49 199.5 117 82.1
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.9e-46 189.9 206 52.4
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 5.4e-45 186.4 143 73.4
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-42 178.7 197 51.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 3.9e-35 153.7 106 74.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.8e-31 139.0 119 57.1
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 4.6e-28 130.2 82 82.9
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 4.9e-22 110.2 156 47.4
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.0e-11 75.9 67 58.2
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 1.4e-08 65.5 90 44.4
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 2.4e-08 64.7 37 81.1


User provided reference genes

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