Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G006410 Citrullus lanatus HOM05D006353 ORTHO05D007993 5.0e-191 671.0 357 100.0
CsaV3_4G027090 Cucumis sativus L. HOM05D006353 ORTHO05D007993 2.5e-126 456.1 379 71.8
MELO3C025210.2 Cucumis melo HOM05D006353 ORTHO05D007993 6.7e-103 378.3 294 73.1
Sed0002935 Sechium edule HOM05D006353 ORTHO05D007993 2.0e-91 340.1 359 59.6
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 8.1e-48 195.3 359 40.7
Duzib212G0771 Durio zibethinus HOM05D006353 ORTHO05D007993 2.1e-43 180.6 353 38.5
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 2.3e-42 177.2 357 36.1
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 3.3e-41 173.3 354 38.1
Gohir.A10G149700 Gossypium hirsutum HOM05D006353 ORTHO05D007993 5.6e-41 172.6 357 35.9
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 2.8e-40 170.2 352 36.4
Gorai.011G129000 Gossypium raimondii HOM05D006353 ORTHO05D007993 3.6e-40 169.9 352 36.4
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 4.8e-40 169.5 363 37.5
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 4.8e-40 169.5 353 38.0
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 4.8e-40 169.5 352 38.6
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 8.1e-40 168.7 363 37.5
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 1.4e-39 167.9 353 36.5
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 5.3e-39 166.0 354 36.4
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 9.0e-39 165.2 361 37.1
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 9.0e-39 165.2 361 37.1
AT2G38500 Arabidopsis thaliana HOM05D006353 ORTHO05D007993 1.5e-38 164.5 358 39.1
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 2.6e-38 163.7 366 36.9
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 2.6e-38 163.7 366 36.9
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 2.6e-38 163.7 354 36.4
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 3.4e-38 163.3 361 39.3
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 3.4e-38 163.3 355 35.2
AL4G35790 Arabidopsis lyrata HOM05D006353 ORTHO05D007993 5.8e-38 162.5 358 38.3
Carub.0004s2049 Capsella rubella HOM05D006353 ORTHO05D007993 7.6e-38 162.2 357 38.4
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 7.6e-38 162.2 366 36.1
Thhalv10016859m.g Eutrema salsugineum HOM05D006353 ORTHO05D007993 1.7e-37 161.0 358 38.8
MD12G1185800 Malus domestica HOM05D006353 ORTHO05D007993 4.9e-37 159.5 353 36.8
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 4.9e-37 159.5 360 38.3
Aa31LG5G23800 Aethionema arabicum HOM05D006353 ORTHO05D007993 1.1e-36 158.3 372 39.0
QL07p032560 Quercus lobata HOM05D006353 ORTHO05D007993 1.1e-36 158.3 346 35.3
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 5.1e-34 149.4 358 38.0
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 5.1e-34 149.4 358 38.0
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 5.1e-34 149.4 358 38.0
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 1.1e-33 148.3 352 34.4
BcaB01g03678 Brassica carinata HOM05D006353 ORTHO05D007993 1.5e-33 147.9 354 37.6
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 1.9e-33 147.5 358 37.4
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 1.9e-33 147.5 326 34.4
BcaB01g03677 Brassica carinata HOM05D006353 ORTHO05D007993 2.5e-33 147.1 360 37.5
Ciclev10012094m.g Citrus clementina HOM05D006353 ORTHO05D007993 2.5e-33 147.1 361 33.5
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 2.1e-32 144.1 356 37.1
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 3.7e-32 143.3 360 33.3
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.8e-31 141.0 352 35.8
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 3.1e-31 140.2 338 34.0
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 9.0e-31 138.7 281 37.7
Phvul.008G084100 Phaseolus vulgaris HOM05D006353 ORTHO05D007993 1.5e-30 137.9 346 34.7
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 1.3e-29 134.8 365 33.4
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 2.9e-29 133.7 368 34.2
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 8.4e-29 132.1 351 33.9
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 1.1e-28 131.7 351 33.9
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 1.1e-28 131.7 359 32.3
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 1.4e-28 131.3 358 32.7
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 1.4e-28 131.3 358 33.5
Glyma.18G215200 Glycine max HOM05D006353 ORTHO05D007993 4.2e-28 129.8 347 33.4
TWI74G0177 Tripterygium wilfordii HOM05D006353 ORTHO05D007993 4.2e-28 129.8 357 33.1
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 7.1e-28 129.0 356 33.4
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 7.1e-28 129.0 356 33.4
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 4.6e-27 126.3 354 33.9
VMungo1383G2355 Vigna mungo HOM05D006353 ORTHO05D007993 4.6e-27 126.3 306 35.3
Manes.09G116500 Manihot esculenta HOM05D006353 ORTHO05D007993 5.1e-26 122.9 374 34.2
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 6.7e-26 122.5 360 32.8
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 5.6e-25 119.4 346 32.1
Sc20g0006870 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.6e-24 117.9 325 32.6
Manes.08G173800 Manihot esculenta HOM05D006353 ORTHO05D007993 2.8e-24 117.1 357 33.9
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 4.8e-24 116.3 340 32.9
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 1.1e-23 115.2 348 32.2
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 1.4e-23 114.8 338 32.5
Oeu026960.1 Olea europaea HOM05D006353 ORTHO05D007993 4.5e-22 109.8 351 29.1
CANSAT35G0573 Cannabis sativa HOM05D006353 ORTHO05D007993 1.7e-21 107.8 363 32.5
Migut.J00057 Erythranthe guttata HOM05D006353 ORTHO05D007993 2.9e-21 107.1 359 30.6
CSS0001064 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 9.3e-20 102.1 307 31.3
Eucgr.K01277 Eucalyptus grandis HOM05D006353 ORTHO05D007993 1.0e-18 98.6 357 28.9
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 1.3e-18 98.2 357 30.8
HanXRQChr14g0433401 Helianthus annuus HOM05D006353 ORTHO05D007993 2.3e-18 97.4 358 29.9
FAN02G1449 Fragaria x ananassa HOM05D006353 ORTHO05D007993 3.0e-18 97.1 290 32.4
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 1.9e-17 94.4 260 32.7
Lsat_1_v5_gn_8_107941 Lactuca sativa HOM05D006353 ORTHO05D007993 4.8e-16 89.7 352 26.1
Actinidia29043 Actinidia chinensis HOM05D006353 ORTHO05D007993 6.3e-16 89.4 191 38.7
MSTRG.18951 Avicennia marina HOM05D006353 ORTHO05D007993 6.3e-16 89.4 343 28.9
Dinv11379 Davidia involucrata HOM05D006353 ORTHO05D007993 6.3e-16 89.4 213 35.2
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 8.2e-16 89.0 377 30.0
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 1.4e-15 88.2 263 31.9
CSS0032329 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 2.4e-15 87.4 276 29.7
PSO384G2070 Papaver somniferum HOM05D006353 ORTHO05D007993 2.4e-15 87.4 382 26.4
ECA236G3817 Erigeron canadensis HOM05D006353 ORTHO05D007993 3.1e-15 87.0 357 28.0
BcaB02g09177 Brassica carinata HOM05D006353 ORTHO05D007993 5.3e-15 86.3 119 46.2
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 6.9e-15 85.9 330 28.5
PSO339G6092 Papaver somniferum HOM05D006353 ORTHO05D007993 9.0e-15 85.5 382 25.9
Hund19788 Selenicereus undatus HOM05D006353 ORTHO05D007993 9.0e-15 85.5 262 31.3
Sopen09g010850 Solanum pennellii HOM05D006353 ORTHO05D007993 9.0e-15 85.5 326 28.2
COL.COLO4_16552 Corchorus olitorius HOM05D006353 ORTHO05D007993 1.0e-13 82.0 150 42.7
HanXRQChr16g0509461 Helianthus annuus HOM05D006353 ORTHO05D007993 5.0e-13 79.7 355 26.8
Ca_07754_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 2.5e-12 77.4 229 31.4
Ca_29600_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 2.5e-12 77.4 229 31.4
Psat3g120040 Pisum sativum HOM05D006353 ORTHO05D007993 2.5e-12 77.4 166 34.3
CiPaw.09G219500 Carya illinoinensis HOM05D006353 ORTHO05D007993 4.2e-12 76.6 137 42.3
PGR004G2035 Punica granatum HOM05D006353 ORTHO05D007993 1.2e-11 75.1 332 25.6
Lsat_1_v5_gn_5_150140 Lactuca sativa HOM05D006353 ORTHO05D007993 2.1e-11 74.3 281 29.9
SalBow5G5035 Salvia bowleyana HOM05D006353 ORTHO05D007993 1.3e-10 71.6 336 27.7
SalBow5G5483 Salvia bowleyana HOM05D006353 ORTHO05D007993 1.3e-10 71.6 336 27.7
DCAR_018544 Daucus carota HOM05D006353 ORTHO05D007993 5.7e-09 66.2 352 28.1
COL.COLO4_16553 Corchorus olitorius HOM05D006353 ORTHO05D007993 2.4e-07 60.8 115 33.9
MBI04_g30107_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 2.4e-07 60.8 221 30.3
ATR0681G315 Amborella trichopoda HOM05D006353 ORTHO05D007993 9.1e-07 58.9 113 34.5
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 9.1e-07 58.9 95 40.0
Nitab4.5_0001469g0020 Nicotiana tabacum HOM05D006353 ORTHO05D007993 1.2e-06 58.5 99 37.4
TPR.G26913 Trifolium pratense HOM05D006353 ORTHO05D007993 1.5e-06 58.2 188 32.4
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 2.0e-06 57.8 357 26.6
Lsat_1_v5_gn_1_36980 Lactuca sativa HOM05D006831 ORTHO05D008256 2.0e-06 57.8 361 27.7
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 4.5e-06 56.6 375 24.5
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 4.5e-06 56.6 102 38.2
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 5.9e-06 56.2 354 26.8
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 7.7e-06 55.8 208 27.9
Peaxi162Scf00732g00043 Petunia axillaris HOM05D006353 ORTHO05D007993 7.7e-06 55.8 107 31.8


User provided reference genes

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