Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 1.8e-33 145.2 67 100.0
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 4.4e-32 140.6 66 97.0
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 1.7e-31 138.7 66 95.5
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 2.4e-30 134.8 67 91.0
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 1.3e-28 129.0 64 90.6
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 5.1e-28 127.1 67 88.1
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 8.7e-28 126.3 67 85.1
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 1.1e-27 125.9 67 83.6
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 2.5e-27 124.8 64 87.5
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 4.3e-27 124.0 64 84.4
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 9.6e-27 122.9 62 87.1
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 9.6e-27 122.9 67 83.6
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 1.3e-26 122.5 63 87.3
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 1.3e-26 122.5 63 87.3
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 1.3e-26 122.5 63 87.3
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 1.3e-26 122.5 63 87.3
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 1.3e-26 122.5 63 87.3
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 1.3e-26 122.5 63 87.3
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 2.1e-26 121.7 62 87.1
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 4.8e-26 120.6 63 85.7
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 6.2e-26 120.2 64 82.8
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 1.8e-25 118.6 65 81.5
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 3.1e-25 117.9 64 84.4
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 3.1e-25 117.9 66 83.3
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 3.1e-25 117.9 64 81.2
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 4.0e-25 117.5 64 79.7
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 5.3e-25 117.1 58 91.4
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 5.3e-25 117.1 66 78.8
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 5.3e-25 117.1 62 87.1
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 5.3e-25 117.1 66 80.3
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 5.3e-25 117.1 66 80.3
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 6.9e-25 116.7 66 80.3
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 6.9e-25 116.7 66 81.8
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 6.9e-25 116.7 63 82.5
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 6.9e-25 116.7 60 90.0
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 9.0e-25 116.3 62 82.3
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 9.0e-25 116.3 61 85.2
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 1.2e-24 115.9 67 80.6
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 1.5e-24 115.5 59 88.1
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 1.5e-24 115.5 64 78.1
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 2.6e-24 114.8 62 83.9
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 2.6e-24 114.8 64 78.1
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.4e-24 114.4 62 80.6
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.4e-24 114.4 62 80.6
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 4.5e-24 114.0 65 80.0
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 4.5e-24 114.0 58 87.9
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 4.5e-24 114.0 58 87.9
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 5.8e-24 113.6 65 80.0
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 5.8e-24 113.6 65 80.0
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 7.6e-24 113.2 58 87.9
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 7.6e-24 113.2 62 79.0
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 9.9e-24 112.8 58 87.9
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 1.3e-23 112.5 63 77.8
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 1.7e-23 112.1 60 80.0
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 2.2e-23 111.7 64 76.6
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 2.2e-23 111.7 56 92.9
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 2.2e-23 111.7 65 80.0
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 2.2e-23 111.7 65 80.0
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 2.9e-23 111.3 63 79.4
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 2.9e-23 111.3 61 80.3
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 3.8e-23 110.9 64 79.7
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 4.9e-23 110.5 64 76.6
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 6.4e-23 110.2 60 83.3
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 6.4e-23 110.2 60 83.3
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 1.1e-22 109.4 61 78.7
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 1.4e-22 109.0 60 81.7
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 1.4e-22 109.0 60 81.7
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 1.4e-22 109.0 60 81.7
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 1.4e-22 109.0 60 81.7
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 1.4e-22 109.0 66 77.3
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 3.2e-22 107.8 63 77.8
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 3.2e-22 107.8 60 80.0
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 3.2e-22 107.8 60 80.0
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 3.2e-22 107.8 60 80.0
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 3.2e-22 107.8 64 78.1
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 3.2e-22 107.8 58 82.8
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 4.2e-22 107.5 58 82.8
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 4.2e-22 107.5 58 82.8
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 4.2e-22 107.5 60 80.0
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 5.4e-22 107.1 60 80.0
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 7.1e-22 106.7 60 80.0
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 1.2e-21 105.9 57 82.5
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 1.6e-21 105.5 60 78.3
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 6.0e-21 103.6 56 83.9
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 1.0e-20 102.8 60 75.0
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 1.3e-20 102.4 61 73.8
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 2.3e-20 101.7 51 88.2
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 3.9e-20 100.9 66 62.1
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 2.1e-18 95.1 59 72.9
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 1.4e-17 92.4 66 65.2
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 3.1e-17 91.3 60 71.7
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 3.4e-16 87.8 47 83.0
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 4.5e-16 87.4 64 65.6
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 1.7e-15 85.5 64 65.6
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 1.7e-15 85.5 48 79.2
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.9e-11 72.0 36 88.9
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 2.5e-11 71.6 36 88.9
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 2.5e-11 71.6 36 88.9
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 3.3e-11 71.2 38 81.6
Mapoly0148s0030 Marchantia polymorpha HOM05D007303 ORTHO05D009231 9.6e-11 69.7 60 51.7
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 1.4e-09 65.9 36 80.6
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 4.0e-09 64.3 32 87.5
Pp3c10_5690 Physcomitrium patens HOM05D007303 ORTHO05D009231 5.3e-09 63.9 58 48.3
Pp3c10_5720 Physcomitrium patens HOM05D007303 ORTHO05D009231 5.3e-09 63.9 58 48.3
Cc07_g13470 Coffea canephora HOM05D007303 ORTHO05D009231 1.2e-08 62.8 42 66.7
CBR_g5630 Chara braunii HOM05D007303 ORTHO05D009231 2.6e-08 61.6 53 50.9


User provided reference genes

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