Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 4.5e-112 407.9 204 100.0
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 4.3e-110 401.4 204 98.0
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 7.2e-110 400.6 204 97.5
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 3.5e-104 381.7 203 92.1
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 6.2e-93 344.4 203 79.8
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.8e-92 342.8 204 79.9
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.3e-92 342.4 204 79.4
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.6e-91 339.0 205 79.0
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.4e-91 338.6 204 79.4
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 9.8e-91 337.0 204 78.4
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 2.9e-90 335.5 204 78.9
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 7.1e-89 330.9 204 76.0
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 9.2e-89 330.5 206 76.2
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.6e-88 329.7 206 76.2
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 3.5e-88 328.6 204 77.5
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.0e-87 327.0 204 77.9
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.3e-87 326.6 204 77.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.3e-87 326.6 204 77.0
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.3e-87 325.9 204 76.5
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 3.9e-87 325.1 227 70.9
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.5e-86 322.4 204 76.0
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 9.5e-86 320.5 202 74.8
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 9.5e-86 320.5 205 76.1
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.6e-85 319.7 205 75.6
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.6e-85 318.5 204 76.5
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 6.2e-85 317.8 204 73.0
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.1e-84 317.0 203 73.4
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.1e-84 317.0 205 75.1
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.8e-84 316.2 204 75.0
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.8e-84 316.2 207 73.9
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.3e-84 315.8 207 73.9
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.0e-84 315.1 204 73.5
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 4.0e-84 315.1 204 75.5
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 4.0e-84 315.1 204 72.1
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 5.2e-84 314.7 203 73.9
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 8.9e-84 313.9 200 75.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 8.9e-84 313.9 203 75.4
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.0e-83 312.8 202 73.3
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.0e-83 312.8 202 73.3
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.0e-83 312.8 201 73.6
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 2.6e-83 312.4 205 73.2
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.6e-83 312.4 204 72.5
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.4e-83 312.0 206 74.8
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.4e-83 312.0 204 71.1
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 4.4e-83 311.6 205 73.7
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 5.8e-83 311.2 205 73.7
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.8e-83 311.2 205 72.7
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 7.6e-83 310.8 200 73.5
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.3e-82 310.1 201 73.6
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.2e-82 309.3 205 72.2
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.2e-82 309.3 203 74.4
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 2.2e-82 309.3 203 73.4
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.7e-82 308.5 204 72.1
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.7e-82 308.5 204 72.1
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 3.7e-82 308.5 201 72.6
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 3.7e-82 308.5 205 73.2
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 8.4e-82 307.4 203 72.4
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 8.4e-82 307.4 203 72.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.1e-81 307.0 203 71.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.1e-81 307.0 202 73.8
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.4e-81 306.6 205 72.7
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 1.9e-81 306.2 201 71.6
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 2.4e-81 305.8 203 72.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 71.4
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.2e-81 305.4 205 72.7
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.1e-81 305.1 204 71.1
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.1e-81 305.1 205 72.2
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 5.4e-81 304.7 202 71.8
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 5.4e-81 304.7 200 72.5
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 7.1e-81 304.3 204 72.1
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 7.1e-81 304.3 203 70.4
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 9.2e-81 303.9 203 74.4
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 9.2e-81 303.9 200 73.5
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 71.9
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 71.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.2e-80 303.5 203 70.9
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.2e-80 303.5 204 74.0
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.1e-80 302.8 202 71.3
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 2.1e-80 302.8 203 71.4
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 3.5e-80 302.0 204 74.0
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.5e-80 302.0 205 71.2
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 4.6e-80 301.6 204 70.1
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 6.0e-80 301.2 203 71.9
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 6.0e-80 301.2 203 71.9
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 6.0e-80 301.2 203 71.9
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 6.0e-80 301.2 203 71.4
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 6.0e-80 301.2 201 72.6
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 7.8e-80 300.8 203 71.9
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.7e-79 299.7 202 70.8
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.7e-79 299.7 204 73.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 70.9
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 71.4
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 5.1e-79 298.1 204 72.1
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 8.6e-79 297.4 193 74.1
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.5e-78 296.6 203 70.9
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.9e-78 296.2 203 73.4
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.9e-78 296.2 194 71.1
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.5e-78 295.8 205 72.2
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 4.3e-78 295.0 209 70.3
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.2e-77 293.5 205 68.3
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 1.6e-77 293.1 256 60.5
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 2.1e-77 292.7 196 71.9
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 4.7e-77 291.6 213 66.7
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 6.2e-77 291.2 204 67.6
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 6.2e-77 291.2 205 67.8
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.6e-75 285.8 207 65.7
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.8e-75 284.6 205 68.3
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.2e-74 282.7 205 65.9
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.2e-73 278.9 202 66.8
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 4.2e-73 278.5 206 66.5
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 4.2e-73 278.5 204 66.2
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 5.4e-73 278.1 202 64.9
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 9.3e-73 277.3 202 65.8
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.3e-71 273.5 204 67.6
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 4.9e-66 255.0 204 57.4
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 8.4e-66 254.2 193 62.7
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 4.6e-64 248.4 202 60.4
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 3.9e-63 245.4 207 56.5
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.7e-58 229.9 208 54.3
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 5.5e-57 224.9 146 72.6
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.0e-55 220.7 214 52.3
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.3e-55 219.5 139 74.1
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 3.3e-54 215.7 210 51.0
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.3e-53 213.8 205 57.6
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 6.2e-53 211.5 137 74.5
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.1e-52 210.7 141 73.8
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.0e-51 206.5 154 69.5
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.0e-51 206.5 211 51.7
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.2e-49 199.1 148 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 4.3e-46 188.7 206 47.6
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.5e-43 178.7 166 55.4
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 8.5e-42 174.5 127 63.8
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.6e-37 160.2 174 50.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.2e-25 119.0 194 38.1
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 5.5e-25 118.6 99 60.6
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 9.4e-25 117.9 192 35.9
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.1e-24 116.7 135 49.6
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 7.9e-24 114.8 128 43.8
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.3e-23 113.2 66 77.3
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 7.4e-22 108.2 69 73.9
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.7e-21 107.1 198 34.8
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.0e-20 101.7 73 61.6
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.9e-19 98.6 69 71.0
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 1.0e-15 87.8 63 66.7
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.3e-15 86.7 51 76.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 8.2e-13 78.2 74 59.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.0e-12 75.1 50 74.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.0e-12 75.1 50 74.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.5e-11 72.8 68 55.9
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.2e-09 66.2 120 35.8
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 2.7e-08 63.2 51 54.9
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 7.5e-06 55.1 42 59.5


User provided reference genes

Program Settings