Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 4.2e-136 488.0 246 100.0
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 1.0e-121 440.3 246 89.8
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 3.2e-120 435.3 246 89.8
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 2.9e-105 385.6 248 79.0
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.3e-84 317.0 245 66.9
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 3.7e-84 315.5 249 66.7
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 3.1e-83 312.4 250 64.8
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 7.0e-83 311.2 245 66.1
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 2.0e-82 309.7 250 60.4
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 2.2e-81 306.2 247 62.8
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 5.0e-81 305.1 246 63.8
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 6.5e-81 304.7 249 62.7
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 6.1e-79 298.1 247 63.2
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 1.4e-78 297.0 246 61.0
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 5.2e-78 295.0 204 68.6
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 1.2e-77 293.9 245 60.8
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 2.6e-77 292.7 279 60.2
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 3.4e-77 292.4 205 68.8
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 3.4e-77 292.4 247 61.5
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 4.4e-77 292.0 251 60.2
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 4.4e-77 292.0 258 60.5
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 1.3e-76 290.4 248 61.3
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 3.7e-76 288.9 245 61.6
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 4.8e-76 288.5 248 60.5
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 4.8e-76 288.5 246 61.4
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 6.3e-76 288.1 248 60.9
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 1.1e-75 287.3 247 63.2
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 4.1e-75 285.4 249 61.0
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 5.4e-75 285.0 247 58.3
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 7.0e-75 284.6 248 60.1
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 9.1e-75 284.3 250 57.6
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 2.0e-74 283.1 249 61.0
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 5.9e-74 281.6 246 58.5
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 5.9e-74 281.6 249 60.6
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 1.0e-73 280.8 250 56.8
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 1.0e-73 280.8 253 60.1
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 1.0e-73 280.8 246 58.9
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 2.2e-73 279.6 212 67.0
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 6.5e-73 278.1 203 65.5
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 6.5e-73 278.1 246 60.2
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 1.1e-72 277.3 249 58.2
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.1e-72 277.3 246 57.7
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 2.5e-72 276.2 203 65.0
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 5.5e-72 275.0 247 59.9
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 1.2e-71 273.9 206 67.0
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 1.6e-71 273.5 251 60.6
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 1.6e-71 273.5 263 54.4
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 2.7e-71 272.7 208 65.9
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 2.7e-71 272.7 246 59.3
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 6.1e-71 271.6 207 66.7
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 5.2e-70 268.5 209 66.0
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 8.8e-70 267.7 246 60.6
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 1.5e-69 266.9 205 64.4
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 1.5e-69 266.9 208 65.4
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 1.5e-69 266.9 251 57.0
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 2.0e-69 266.5 207 64.3
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 2.0e-69 266.5 246 56.9
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 3.4e-69 265.8 209 62.2
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 3.4e-69 265.8 209 62.2
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 4.4e-69 265.4 207 65.7
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 4.4e-69 265.4 205 63.4
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 5.7e-69 265.0 246 55.3
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 5.7e-69 265.0 203 65.0
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 5.7e-69 265.0 252 57.5
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 9.8e-69 264.2 205 63.4
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 9.8e-69 264.2 205 63.4
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 2.2e-68 263.1 257 57.6
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 4.9e-68 261.9 206 63.1
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 4.9e-68 261.9 207 62.3
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 1.8e-67 260.0 249 57.0
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 3.1e-67 259.2 204 61.8
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 7.0e-67 258.1 237 56.5
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.2e-66 257.3 200 61.5
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 4.5e-66 255.4 245 55.1
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 3.8e-65 252.3 252 54.8
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 5.0e-65 251.9 210 61.4
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 6.6e-65 251.5 216 59.3
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 6.6e-65 251.5 248 55.2
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.5e-64 250.4 235 58.3
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 1.4e-62 243.8 247 54.3
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 3.4e-61 239.2 200 60.0
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 4.4e-61 238.8 154 67.5
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 4.9e-60 235.3 197 60.4
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 8.3e-60 234.6 200 56.5
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 1.1e-59 234.2 200 55.5
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 3.5e-58 229.2 200 56.5
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 7.3e-56 221.5 200 56.0
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 1.4e-54 217.2 178 66.3
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 4.0e-54 215.7 141 67.4
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 2.7e-50 203.0 131 69.5
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 6.2e-47 191.8 251 45.4
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 4.0e-46 189.1 113 74.3
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 1.7e-44 183.7 114 71.9
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 3.5e-42 176.0 109 68.8
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 7.8e-42 174.9 137 56.2
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 1.2e-39 167.5 322 38.2
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 3.6e-39 166.0 109 63.3
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 4.0e-38 162.5 110 65.5
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 5.8e-37 158.7 191 48.2
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 2.1e-34 150.2 96 68.8
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 3.5e-34 149.4 132 53.0
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 5.6e-32 142.1 88 72.7
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 5.8e-29 132.1 77 76.6
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 4.9e-28 129.0 76 76.3
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 1.7e-25 120.6 181 38.1
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 6.9e-22 108.6 115 44.3
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 4.5e-21 105.9 73 63.0
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 9.9e-21 104.8 68 66.2
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 1.4e-19 100.9 152 43.4
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 1.2e-18 97.8 68 64.7
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 6.7e-17 92.0 58 72.4
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 1.9e-16 90.5 71 56.3
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 4.8e-15 85.9 138 33.3
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 3.1e-14 83.2 142 44.4
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 3.5e-10 69.7 43 65.1
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 5.1e-09 65.9 73 50.7
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 8.7e-09 65.1 73 49.3
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 1.1e-06 58.2 145 37.2


User provided reference genes

Program Settings